BAC Information

Click to search

BAC

Clone NameMSMg01-366L04
Chromosome1 (Build37)
Map Location 176,376,043 - 176,400,729
singlet/doubletdoublet
Overlap geneOlfr220
Upstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414
Downstream geneFmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366L04.T7 (MSMg01no366_l04.b1)MSMg01-366L04.TJ (MSMg01no366_l04.g1)
ACCAG474350AG474351
length781745
length of high quality
(start - end)		303 (52 - 354)536 (74 - 609)
definitionCHROMAT_FILE: MSMg01no366_l04.b1 PHD_FILE: MSMg01no366_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:37 2005CHROMAT_FILE: MSMg01no366_l04.g1 PHD_FILE: MSMg01no366_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,400,431 - 176,400,729)(176,376,043 - 176,376,578)
sequence
AAGTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCGGGTCCTGAGGGGTTAACAGCCTTCTGAAGTCAGCTTCC
TGTGCACCAGAGAATTCATTGAGGTCCTTCTGGATTTTTATTCAGTAACT
CATGGTGTCTGGGAGGTTCTTTTTCCAGCCATTCAGGGTGATTTCTCCAT
TTAAATTCTTTAGTCGCTTCTTGAGCAATCCAGCTTTTTCACCAGTCAAC
TGGTCCATAGTAGTTGGTTTTTCTCTTCCTCCTCCTGCGCATGGATGTGC
AGCTAATGTCCTCATTGCTGCCAATTTGGGGTTGGAGGTGGAGGAGGGGA
TGGNNCAGGANANNNTTTTTNNCNTTGATTTTTNNAATTTGTGGTGTTGN
NTTCNTTTNTTTTTGATTCCCCCTTCCTTGCTTTCTCCTATACTCTTTCC
CCCCGCTATCCTACCTTTCTGTATGTTCCTTCTCCTGTATCCTTGATTTT
CCTGTTTTTGCCCTTCCCCTTTCTTTCTCTTACCGTAACAACTTTTCCTT
CTTTTCTATCTTTCCTAATTTCAATTCTGTTTTCTTTTTCTCTTTTCCCT
TTCTCTCCTTTTCTTCTTGTATTTTTTCTTTTCTTTTTCCCTTCTTTTTC
CCCTTTCCCTCTTATTTCCTATTTATTTCTCCCCGTTTTCTTTTTTTCTT
CTTTTTTCTCCCCCTCATTTCCCTCCCTATTTTCTTTCTCTCTTATCTCC
ACTTTTCTTTTTTCCCCCATTTTTTTTTTTN

NNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTATGTTAATTTATCTCTGGTTCTG
AACACGTGTCTGGACATCTTTATTGCTGTTGGGTATCAAAGAGGAAGGAA
TGAGGGTGACATGGTTTCAATGAAAGCATTTCCTTTGTGTTCTTTGTGTG
TTGGATGATATCCTAGAGCCAGCTTAGAACTATATTGTCTGTTATGATTC
TTTAGAGGCAATGGGAAATGCTTGCAGAATAACACACGTTCTTTTCTCCT
TTTATTTTTATTATTAGTTAATCTTTTTTTCCACTCTAGTCGCTATCCTT
CTCCGATCTGCCCTCCAACTGTTCCTCATCCCATTCCGCCTCCCCTGTCT
CCAAGAGGATGTCCCCACCACCCCTCACACCTCCACCTCACCGGACCTCC
CCACTCCATGGGGCTTCACATCTCTTGAGGGTTAGGTGTGTCTTCTATCA
CTGAGGCCAGATCCAGCAGTCCTTGGCTACATATGTATCAGGAACCTCAT
ATACATATAGGCACCAGCTAGTGCATGCTGCCTCATTGGTTTGCCTGTCA
TTTTCTAGAATGTAAAAATGTGTGCAGTAACTGACCTAAGCACTTGGATC
TGGAAGGTGAAACATACTAGCATTAGACCAAAATCTTCCCCCCAACAGGC
ACGCAAACCCTTGGTAGTCGAAAAGGAAATGATTAAATGGAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_l04.b1 MSMg01no366_l04.b1 CHROMAT_FILE:
MSMg01no366_l04.b1 PHD_FILE: MSMg01no366_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:37 2005
         (303 letters)



>mm_chr1_176400068_176400770
          Length = 703

 Score =  578 bits (299), Expect = e-169
 Identities = 299/299 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcgggtcctgaggggttaacagccttctgaagtcagcttcctgtgcaccagagaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ggaattcgggtcctgaggggttaacagccttctgaagtcagcttcctgtgcaccagagaa 603

                                                                       
Query: 64  ttcattgaggtccttctggatttttattcagtaactcatggtgtctgggaggttcttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttcattgaggtccttctggatttttattcagtaactcatggtgtctgggaggttcttttt 543

                                                                       
Query: 124 ccagccattcagggtgatttctccatttaaattctttagtcgcttcttgagcaatccagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ccagccattcagggtgatttctccatttaaattctttagtcgcttcttgagcaatccagc 483

                                                                       
Query: 184 tttttcaccagtcaactggtccatagtagttggtttttctcttcctcctcctgcgcatgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttttcaccagtcaactggtccatagtagttggtttttctcttcctcctcctgcgcatgg 423

                                                                      
Query: 244 atgtgcagctaatgtcctcattgctgccaatttggggttggaggtggaggaggggatgg 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgtgcagctaatgtcctcattgctgccaatttggggttggaggtggaggaggggatgg 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_l04.g1 MSMg01no366_l04.g1 CHROMAT_FILE:
MSMg01no366_l04.g1 PHD_FILE: MSMg01no366_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:37 2005
         (536 letters)



>mm_chr1_176375843_176376778
          Length = 936

 Score = 1036 bits (536), Expect = 0.0
 Identities = 536/536 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttatgttaatttatctctggttctgaacacgtgtctggacatctttattgctgttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttatgttaatttatctctggttctgaacacgtgtctggacatctttattgctgttggg 260

                                                                       
Query: 61  tatcaaagaggaaggaatgagggtgacatggtttcaatgaaagcatttcctttgtgttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcaaagaggaaggaatgagggtgacatggtttcaatgaaagcatttcctttgtgttct 320

                                                                       
Query: 121 ttgtgtgttggatgatatcctagagccagcttagaactatattgtctgttatgattcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgtgttggatgatatcctagagccagcttagaactatattgtctgttatgattcttt 380

                                                                       
Query: 181 agaggcaatgggaaatgcttgcagaataacacacgttcttttctccttttatttttatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggcaatgggaaatgcttgcagaataacacacgttcttttctccttttatttttatta 440

                                                                       
Query: 241 ttagttaatctttttttccactctagtcgctatccttctccgatctgccctccaactgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagttaatctttttttccactctagtcgctatccttctccgatctgccctccaactgtt 500

                                                                       
Query: 301 cctcatcccattccgcctcccctgtctccaagaggatgtccccaccacccctcacacctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcatcccattccgcctcccctgtctccaagaggatgtccccaccacccctcacacctc 560

                                                                       
Query: 361 cacctcaccggacctccccactccatggggcttcacatctcttgagggttaggtgtgtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacctcaccggacctccccactccatggggcttcacatctcttgagggttaggtgtgtct 620

                                                                       
Query: 421 tctatcactgaggccagatccagcagtccttggctacatatgtatcaggaacctcatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctatcactgaggccagatccagcagtccttggctacatatgtatcaggaacctcatata 680

                                                                   
Query: 481 catataggcaccagctagtgcatgctgcctcattggtttgcctgtcattttctaga 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catataggcaccagctagtgcatgctgcctcattggtttgcctgtcattttctaga 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |