BAC Information

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BAC

Clone NameMSMg01-366M04
Chromosome1 (Build37)
Map Location 158,993,575 - 159,180,341
singlet/doubletdoublet
Overlap gene1700057K13Rik, Rasal2
Upstream geneTdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik
Downstream geneGabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217, 6430517E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366M04.T7 (MSMg01no366_m04.b1)MSMg01-366M04.TJ (MSMg01no366_m04.g1)
ACCAG474397AG474398
length759749
length of high quality
(start - end)		480 (50 - 529)274 (332 - 605)
definitionCHROMAT_FILE: MSMg01no366_m04.b1 PHD_FILE: MSMg01no366_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:42 2005CHROMAT_FILE: MSMg01no366_m04.g1 PHD_FILE: MSMg01no366_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,179,962 - 159,180,341)(158,993,575 - 158,993,848)
sequence
NCGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCTATACAACTTTCAAAATGAACAATCTATATTTTATACAACA
CAAAATACTGCAGGGACGGCTGTATAAAGTCTCTGCGGACGACCTCTGCC
TGTTGGGCAGAGTCTGTTATTTTGCCACTGTGCTTCATATTCCTAGCATG
TTGGCCTCTAAGCTTCCAGGTGATTTTCTTGTTTCTACCTGTCATTTCAC
TATACGGGTGTTGGGAGTATATATGTGTTCTGCCATATGTGGCTTTTACC
TACTGAGCCATCTCTCTGGACCCTATATTAATTTTATCTTGTCATATAAA
GCTTAGCAAATTATAATGCCTATTTTACCTTTATTATTTTCCAGACTAGA
AGTCCCGATAGAGTCTAGCTTATTCTTTTCTGAGAAGATTACAAGACCCA
ACTAAGAGGTAGACCAGGTTGTGTTTTCTTCCCAAGCTAGATGTTCAGTT
CTCTTGAGTACCTTGCAGCCTGTTGACTATATAGGACTGAGATCTATGGC
CATTTTTTTTTTCACTTTCTTTTTTTTTTTTTTTTTCCATTTTTTATTAG
GTATTTAACTCATTTACTTTTCCCATGCTTTACCAAAAGTCCTCTATATT
TTTCCACCCCCCATTCCCTGTTTACCCATTCCCCCTTTTTGGGGCCGGGT
GTTCTCCTTGCCCGGTTTACCATTCATTCTTGCACTTATTTGGTCCTTCT
TTTTTTTTG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCCCATCTGGGAAGAGCTAG
GAATACTGAATTTAGGCTAATGGTTCAATGCAAAGTTGTCTGTCCTGAAT
GCATTACAAATACCGACTCGTCTATTTGAATCCATTCATTCCATATGTAT
CTCTGGTTTCATTCATTCCATATGTATCATTTGTTTCTCTGCTGATTAAC
TGTCACGAACCATGGGCTTGATTCTTGGTGACAATCCGATAGTCCTTGCA
AAAACAAAGAGTTGATCTTGAACCATCCTGGTGGAAATAGCTTGCAGCAC
ACAGAACTCCAGTCAGCTGACCTTGCTGCCTTTGCTAAGCCAGCTCCCTT
TATCACAGGCAGGTTCATCTTACAGCTCAGCTGGCGTGCAACAATTTTCT
CAGATGTCAGGTGAAATGAGACGCAAAATGCTTTCTGAAATCTACATGGC
AGCTGATAAAAAGGAAAATTTGTTGATGCTTATGGGTAAGGCTGGATGTG
TTTCTAGCTCAGCTACATGGCGTGAGTAGCATAGACAGAAAGATCTTCCC
TGAGAAGATAGGCCTGGGCTGGGTCTCTGTCAAAGGCAGGAGTGTCCTTG
GCACAGACAGGAGATGGGTTTCCATGTGAGGCAGGAAGGGCTGAGGGTAG
TAAACTGTGCTGACGCCTTGTACCACTTGAAGAATGAACCCCCACTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_m04.b1 MSMg01no366_m04.b1 CHROMAT_FILE:
MSMg01no366_m04.b1 PHD_FILE: MSMg01no366_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:42 2005
         (480 letters)



>mm_chr1_159179662_159180541
          Length = 880

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 101 ctgttgggcagagtctgttattttgccactgtgcttcatattcctagcatgttggcctct 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgttgggcagagtctgttattttgccactgtgcttcatattcctagcatgttggcctct 621

                                                                       
Query: 161 aagcttccaggtgattttcttgtttctacctgtcatttcactatacgggtgttgggagta 220
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagcttccaggtgattttcttgtctctacctgtcatttcactatacgggtgttgggagta 561

                                                                       
Query: 221 tatatgtgttctgccatatgtggcttttacctactgagccatctctctggaccctatatt 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatatgtgttctgccatatgtggcttttacctactgagccatctctctggaccctatatt 501

                                                                       
Query: 281 aattttatcttgtcatataaagcttagcaaattataatgcctattttacctttattattt 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aattttatcttgtcatataaagcttagcaaattataatgcctattttacctttattattt 441

                                                                       
Query: 341 tccagactagaagtcccgatagagtctagcttattcttttctgagaagattacaagaccc 400
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccagactagaagccccgatagagtctagcttattcttttctgagaagattacaagaccc 381

                                                                       
Query: 401 aactaagaggtagaccaggttgtgttttcttcccaagctagatgttcagttctcttgagt 460
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 aactaagaggtagaccaggttgtgttttcttcccaagctagatgctcagttctcttgagt 321

                               
Query: 461 accttgcagcctgttgacta 480
           ||||||||||||||||||||
Sbjct: 320 accttgcagcctgttgacta 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_m04.g1 MSMg01no366_m04.g1 CHROMAT_FILE:
MSMg01no366_m04.g1 PHD_FILE: MSMg01no366_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:42 2005
         (274 letters)



>mm_chr1_158993375_158994048
          Length = 674

 Score =  501 bits (259), Expect = e-146
 Identities = 271/275 (98%), Gaps = 2/275 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaaatagcttgcagcacacagaactccagtcagctgaccttgctgcctttgctaagcc 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tggaaatagcttgcagcacacagaactccagtcagctggccttgctgcctttgctaagcc 260

                                                                       
Query: 61  agctccctttatcacaggcaggttcatcttacagctcagctggcgtgcaacaattttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctccctttatcacaggcaggttcatcttacagctcagctggcgtgcaacaattttctc 320

                                                                       
Query: 121 agatgtcaggtgaaatgagacgcaaaatgctttctgaaatctacatggcagctgataaaa 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgtcgggtgaaatgagacgcaaaatgctttctgaaatctacatggcagctgataaaa 380

                                                                       
Query: 181 aggaaaatttgttgatgcttatgggtaaggctggatgtgtttctagctcagctacatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaaaatttgttgatgcttatgggtaaggctggatgtgtttctagctcagctacatggc 440

                                              
Query: 241 gt-gagtagcatagacagaaagatcttccctgaga 274
            | ||||||||||||||||||||||||||||||||
Sbjct: 441 -tcgagtagcatagacagaaagatcttccctgaga 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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