BAC Information

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BAC

Clone NameMSMg01-367F05
Chromosome1 (Build37)
Map Location 68,733,346 - 68,916,982
singlet/doubletdoublet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367F05.T7 (MSMg01no367_f05.b1)MSMg01-367F05.TJ (MSMg01no367_f05.g1)
ACCAG474825AG474826
length759732
length of high quality
(start - end)		553 (51 - 603)552 (56 - 607)
definitionCHROMAT_FILE: MSMg01no367_f05.b1 PHD_FILE: MSMg01no367_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:27 2005CHROMAT_FILE: MSMg01no367_f05.g1 PHD_FILE: MSMg01no367_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,733,346 - 68,733,894)(68,916,431 - 68,916,982)
sequence
NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATACTTCTTTGTTTTCCAATTACTATCCACCAACAATGTT
TGGTACTGGCATAATATAATAGATACAAATAAATAGATTAATGGAACATT
TATATCAGTTCAGAAACAAACTTTATATTTTTGGCCAGTAGTTTTCCTTC
TAGTCTTTGAAGATCATTTCTGAGGAGTTGGGTAAGAATAGTTTTCCAAC
AAATTACTCCCCTTCTCTATTTCTCATCATATAGACAAATTAACCTTAAA
TTCACAGAAACTGGACAAAATATATAAATATGTGAAATAGAGTGACTTTT
TATGTTTTTGGTTGAAGCTAAAGTTTTCATAGGTCCTCTCACTTTTAATT
TAATTTAAATATCCTATAATATTTATTACAAGTCCATCTCTGTATACATT
ATTACTATTCTTTAAATATCTAATTTTTTTCAAAACTAAGAGTCAACTTG
TAATTCTATACTTCTTTCTATGATACAAGCATGCCTAAGACTTTGGTTTT
CTATGACAAAAATTAATTATGCTCAAGCTATTATCATCATTGCTCTCAAA
TTATATTTATCCCTGGTGTTTCAACCTGAGAAATAGTAGCAATAAGAATT
CTTTGTACTGTTTGTGTTCTGACAACCCACAGACCTGGCTTGGATATGGG
ACTCTTCTCAAAATTCTTATAAGGGAGAAAAAGAAACCCCCCCCCTTAAA
TAAAGTTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTTGGCTGTTCACACATATAATGAGTTGTCTATTCTTATTGTTTA
TTTGGCCTGTGTTGAAATTACTAGTGGTCAGGATCTCATTTATTTTTTTC
AGAAAAAAAATATTCCATATATGGAGGTAGAGTTTCAATTTTTTTCTCAG
AAACTTTCTCTTCACATTATAATTCAGTTGGGGAGATAAAAAATTGTTCT
AAATGTTGTTTGATCTTTCTTTAAAATGTATGAGTGCTGTGAAAAGAAGA
AAAAATTCCCATTTCTAAAAATTAGAATGCATTCGTATTTCTCTTTGACA
ATTAAGCACAGCAGTTAATTTAGGTAAGGACTTTTCGTATCTTTGCCAGA
ATAAAATATTGTCCTTAATTTAAGTACTCTACCAGAAGTTAATGATCTAT
ACCTTCACATATTTCCAGTTTAATTTTAAAGGGAAATCTCTGCATCTCCA
TACAAGCAATAAAGACTATCATGTTACATCAGTTTCGAGGAGAGAGTAAG
CATCTAGCATTGACTTCCTTTAGAGGAGGATGACCTGTCAAGATGCAGTT
TGATTAGTGTAGCAAAATTTATGACATTAACCTGAAGATAAAGTCAGATA
AAATGTATAATGGTGAAGAGGAACGGAAATATAGTGGAGCTATCTTAGAA
TTTTGTTTTTGACTCCCAATGGAAATTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_f05.b1 MSMg01no367_f05.b1 CHROMAT_FILE:
MSMg01no367_f05.b1 PHD_FILE: MSMg01no367_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:27 2005
         (553 letters)



>mm_chr1_68733142_68734094
          Length = 953

 Score = 1062 bits (549), Expect = 0.0
 Identities = 549/549 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatacttctttgttttccaattactatccaccaacaatgtttggtactggcataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatacttctttgttttccaattactatccaccaacaatgtttggtactggcataa 264

                                                                       
Query: 65  tataatagatacaaataaatagattaatggaacatttatatcagttcagaaacaaacttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tataatagatacaaataaatagattaatggaacatttatatcagttcagaaacaaacttt 324

                                                                       
Query: 125 atatttttggccagtagttttccttctagtctttgaagatcatttctgaggagttgggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatttttggccagtagttttccttctagtctttgaagatcatttctgaggagttgggta 384

                                                                       
Query: 185 agaatagttttccaacaaattactccccttctctatttctcatcatatagacaaattaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaatagttttccaacaaattactccccttctctatttctcatcatatagacaaattaac 444

                                                                       
Query: 245 cttaaattcacagaaactggacaaaatatataaatatgtgaaatagagtgactttttatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttaaattcacagaaactggacaaaatatataaatatgtgaaatagagtgactttttatg 504

                                                                       
Query: 305 tttttggttgaagctaaagttttcataggtcctctcacttttaatttaatttaaatatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttttggttgaagctaaagttttcataggtcctctcacttttaatttaatttaaatatcc 564

                                                                       
Query: 365 tataatatttattacaagtccatctctgtatacattattactattctttaaatatctaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tataatatttattacaagtccatctctgtatacattattactattctttaaatatctaat 624

                                                                       
Query: 425 ttttttcaaaactaagagtcaacttgtaattctatacttctttctatgatacaagcatgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttttcaaaactaagagtcaacttgtaattctatacttctttctatgatacaagcatgc 684

                                                                       
Query: 485 ctaagactttggttttctatgacaaaaattaattatgctcaagctattatcatcattgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctaagactttggttttctatgacaaaaattaattatgctcaagctattatcatcattgct 744

                    
Query: 545 ctcaaatta 553
           |||||||||
Sbjct: 745 ctcaaatta 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no367_f05.g1 MSMg01no367_f05.g1 CHROMAT_FILE:
MSMg01no367_f05.g1 PHD_FILE: MSMg01no367_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:27 2005
         (552 letters)



>mm_chr1_68916231_68917182
          Length = 952

 Score = 1067 bits (552), Expect = 0.0
 Identities = 552/552 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggctgttcacacatataatgagttgtctattcttattgtttatttggcctgtgttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cttggctgttcacacatataatgagttgtctattcttattgtttatttggcctgtgttga 693

                                                                       
Query: 61  aattactagtggtcaggatctcatttatttttttcagaaaaaaaatattccatatatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aattactagtggtcaggatctcatttatttttttcagaaaaaaaatattccatatatgga 633

                                                                       
Query: 121 ggtagagtttcaatttttttctcagaaactttctcttcacattataattcagttggggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggtagagtttcaatttttttctcagaaactttctcttcacattataattcagttggggag 573

                                                                       
Query: 181 ataaaaaattgttctaaatgttgtttgatctttctttaaaatgtatgagtgctgtgaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ataaaaaattgttctaaatgttgtttgatctttctttaaaatgtatgagtgctgtgaaaa 513

                                                                       
Query: 241 gaagaaaaaattcccatttctaaaaattagaatgcattcgtatttctctttgacaattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaagaaaaaattcccatttctaaaaattagaatgcattcgtatttctctttgacaattaa 453

                                                                       
Query: 301 gcacagcagttaatttaggtaaggacttttcgtatctttgccagaataaaatattgtcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gcacagcagttaatttaggtaaggacttttcgtatctttgccagaataaaatattgtcct 393

                                                                       
Query: 361 taatttaagtactctaccagaagttaatgatctataccttcacatatttccagtttaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 taatttaagtactctaccagaagttaatgatctataccttcacatatttccagtttaatt 333

                                                                       
Query: 421 ttaaagggaaatctctgcatctccatacaagcaataaagactatcatgttacatcagttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttaaagggaaatctctgcatctccatacaagcaataaagactatcatgttacatcagttt 273

                                                                       
Query: 481 cgaggagagagtaagcatctagcattgacttcctttagaggaggatgacctgtcaagatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cgaggagagagtaagcatctagcattgacttcctttagaggaggatgacctgtcaagatg 213

                       
Query: 541 cagtttgattag 552
           ||||||||||||
Sbjct: 212 cagtttgattag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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