Query= MSMg01no367_h07.b1 MSMg01no367_h07.b1 CHROMAT_FILE:
MSMg01no367_h07.b1 PHD_FILE: MSMg01no367_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:37 2005
(526 letters)
>mm_chr1_165846156_165847080
Length = 925
Score = 963 bits (498), Expect = 0.0
Identities = 516/522 (98%), Gaps = 1/522 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttgcttggtttctcaagtaaagttttcaatatcttacaatcaatgaattatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattcatttgcttggtttctcaagtaaagttttcaatatcttacaatcaatgaattatt 666
Query: 65 ttcaaaactcattattaatcatcctattcctttcaatttcccactacccacttctatctc 124
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 665 tccaaaactcattattaatcatcctatccctttcaatttcccactacccacttctatctt 606
Query: 125 aagtgaacaaacagagagtcctttccttaattttcttaggtaaggcaaaaataatcagca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aagtgaacaaacagagagtcctttccttaattttcttaggtaaggcaaaaataatcagca 546
Query: 185 tcctcacatttgatattgcacattttggaagacccggacttagaagctcagtgatgctcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcctcacatttgatattgcacattttggaagacccggacttagaagctcagtgatgctcg 486
Query: 245 tgctccatctacagagggttccgctccccggtgttctgctgcagttaacatggcatgagc 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 485 tgctccatctacagagggttccgctgcccggtgttctgctgcagttaacatggcatgagc 426
Query: 305 gtgggtcgctcagtagactatgctaatgcataacattacttacagcatatgctcactgct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgggtcgctcagtagactatgctaatgcataacattacttacagcatatgctcactgct 366
Query: 365 agttaaaaagcttgtacagttactaactttgtgaaagaaacttccagacacagcatggga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agttaaaaagcttgtacagttactaactttgtgaaagaaacttccagacacagcatggga 306
Query: 425 taaaaagcttgaggttcacttaaagtttaaagatcgcatggctcacatgaaacactaaga 484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 305 taaaaagcttgaggttcacttaaagtttaaagatagcatggctcacatgaaacactaaga 246
Query: 485 agtttataagtagaaagagaaagttaaaaaaaaaaagtatgt 526
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 245 agtttataagtagaaagagaaagtt-aaaaaaaaaagtatgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_h07.g1 MSMg01no367_h07.g1 CHROMAT_FILE:
MSMg01no367_h07.g1 PHD_FILE: MSMg01no367_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:38 2005
(492 letters)
>mm_chr1_165659042_165659933
Length = 892
Score = 897 bits (464), Expect = 0.0
Identities = 485/496 (97%), Gaps = 7/496 (1%)
Strand = Plus / Plus
Query: 1 tctttctgcttgaccctcatcttttcaacttataatttttctttgaatgtataaacagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tctttctgcttgaccctcatcttttcaacttataatttttctttgaatgtataaacagta 253
Query: 61 aagaccaagaaagaaggtgtatagttaggagatttatactaagaaatttgccttgaaagc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagaccaagaaagaatgtgtatagttaggagatttatactaagaaatttgccttgaaagc 313
Query: 121 tcctactctgtggcaggtaaaatagatgaagtttctgttggattcttttctcaaaaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcctactctgtggcaggtaaaatagatgaagtttctgttggattcttttctcaaaaaaac 373
Query: 181 -------aaaaacaaaaaacaaaaaacaaaaaacaaaccaagatttctcttttattatta 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaaacaaaaaacaaaaaacaaaaaacaaaaaacaaaccaagatttctcttttattatta 433
Query: 234 attgttttatttatttacattgaaaatgttgccccctctgaccccgtccaggtgccccct 293
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 434 attgttttatttatttacattgaaaatgttgccccctccgaccccgtccaggtgccccct 493
Query: 294 gcaagagttcttcaccccctaccccttcccctttgcctctgagagggtgtactctgtttt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gcaagagttcttcaccccctaccccttcccctttgcctctgagagggtgtactctgtttt 553
Query: 354 cagcagtcttgtaagatagtgagatttgtgttttgaaggcttttgttgtggatcttttgc 413
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cagcaatattgtaagatagtgagatttgtgttttgaaggcttttgttgtggatcttttgc 613
Query: 414 cactgggattgcttgtaaagacgctctcttacagtgctttacggttacactggaatggca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cactgggattgcttgtaaagacgctctcttacagtgctttacggttacactggaatggca 673
Query: 474 gcttccactcctggaa 489
||||||||||||||||
Sbjct: 674 gcttccactcctggaa 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
