Query= MSMg01no367_j13.b1 MSMg01no367_j13.b1 CHROMAT_FILE:
MSMg01no367_j13.b1 PHD_FILE: MSMg01no367_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:48 2005
(525 letters)
>mm_chr1_53122820_53123744
Length = 925
Score = 992 bits (513), Expect = 0.0
Identities = 519/521 (99%)
Strand = Plus / Minus
Query: 5 gaattcacagtttcgcaattgaggggaagaccttccatgacttgggaagtttctaaccta 64
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 725 gaattcacagtttcgaaattgaggggaagaccttccatgacttgggaaatttctaaccta 666
Query: 65 atgcaaagctcatgagcacccacagcggtctactaccatggctggaattttcccatatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 atgcaaagctcatgagcacccacagcggtctactaccatggctggaattttcccatatat 606
Query: 125 tatttgttctttgccattaaaatatagcatattaatgggagacatttttgtcggagtgca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tatttgttctttgccattaaaatatagcatattaatgggagacatttttgtcggagtgca 546
Query: 185 gcaagggcctgctgagcctctggggtttgcttggtgcacaagatgagtatgcggatattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gcaagggcctgctgagcctctggggtttgcttggtgcacaagatgagtatgcggatattt 486
Query: 245 ttgtaaaaacacaaattcacactctcctgagcagtaattggccttatatcttttgggtgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttgtaaaaacacaaattcacactctcctgagcagtaattggccttatatcttttgggtgc 426
Query: 305 gataatccagtcccatccaaaggcttcaaaatcgaccgtgagggggtagcggcagcaccg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gataatccagtcccatccaaaggcttcaaaatcgaccgtgagggggtagcggcagcaccg 366
Query: 365 ggattccgtggagtgctcatcgcagtcaagcccaaagtctctccgggacctcttgggtgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggattccgtggagtgctcatcgcagtcaagcccaaagtctctccgggacctcttgggtgt 306
Query: 425 gtctgtcaccttgacttctaaaaagggattctgtgtgaaaaggaaagaacaattatgtaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtctgtcaccttgacttctaaaaagggattctgtgtgaaaaggaaagaacaattatgtaa 246
Query: 485 atagagcctgaaatccttcctaccttaaaaatcattattag 525
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atagagcctgaaatccttcctaccttaaaaatcattattag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_j13.g1 MSMg01no367_j13.g1 CHROMAT_FILE:
MSMg01no367_j13.g1 PHD_FILE: MSMg01no367_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:48 2005
(500 letters)
>mm_chr1_52974154_52975054
Length = 901
Score = 915 bits (473), Expect = 0.0
Identities = 494/501 (98%), Gaps = 1/501 (0%)
Strand = Plus / Plus
Query: 1 tcataatttgtagcatgatacatcagtgaccatagggtgcagtcattttggaagactcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcataatttgtagcatgatacatcagtgaccatagggtgcagtcattttggaagactcat 260
Query: 61 ggggttgagtccaagcaggtggctgtatgattaaaacagtatgcatcttttctactaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggttgagtccaagcaggtggctgtatgattaaaacagtatgcatcttttctactaatt 320
Query: 121 ccctatgggtttttgatgcatgcaggtcaaaattgtgttccctgctctcaggagacttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctatgggtttttgatgcatgcaggtcaaaattgtgttccctgctctcaggagacttgt 380
Query: 181 actacctaagagttgttactaaagtatttgttaactatgttatggtccttt-gcagatac 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 actacctaagagttgttactaaagtatttgttaactatgttatggtccttttgcagatac 440
Query: 240 aaaatatttttagatattttagataaatatatcctcagttacttaaggaaaaagaagttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatatttttagatattttagataaatatatcctcagttacttaaggaaaaagaagttg 500
Query: 300 aaatcagtcaacattagaatgttgaattgaaaagcaagtacctgtgaggtgtggtggtgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatcagtcaacattagaatgttgaattgaaaagcaagtacctgtgaggtgtggtggtgc 560
Query: 360 ccacctttaatcccagcactcaggaggcagagccatatggatctctctgagctccaggcc 419
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 acacctttaatcctagcactcaggagaaagagccatatggatctctctgagctccaggct 620
Query: 420 agcctggtccacttagcatgttctagggcagccagagccacataatgaagataccctgtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcctggtccacttagcatgttctagggcagccagagccacataatgaagataccctgtt 680
Query: 480 tccaaataaaaagaaaaagta 500
|||||| ||||||||||||||
Sbjct: 681 tccaaacaaaaagaaaaagta 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space: 436590
Effective search space used: 436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|