BAC Information

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BAC

Clone NameMSMg01-367J13
Chromosome1 (Build37)
Map Location 52,974,354 - 53,123,544
singlet/doubletdoublet
Overlap geneHibch, 1700019D03Rik, Gdf8
Upstream geneEG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1
Downstream gene1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367J13.T7 (MSMg01no367_j13.b1)MSMg01-367J13.TJ (MSMg01no367_j13.g1)
ACCAG475027AG475028
length771763
length of high quality
(start - end)
525 (50 - 574)500 (76 - 575)
definitionCHROMAT_FILE: MSMg01no367_j13.b1 PHD_FILE: MSMg01no367_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:48 2005CHROMAT_FILE: MSMg01no367_j13.g1 PHD_FILE: MSMg01no367_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,123,024 - 53,123,544)(52,974,354 - 52,974,854)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACAGTTTCGCAATTGAGGGGAAGACCTTCCATGACTTGGGA
AGTTTCTAACCTAATGCAAAGCTCATGAGCACCCACAGCGGTCTACTACC
ATGGCTGGAATTTTCCCATATATTATTTGTTCTTTGCCATTAAAATATAG
CATATTAATGGGAGACATTTTTGTCGGAGTGCAGCAAGGGCCTGCTGAGC
CTCTGGGGTTTGCTTGGTGCACAAGATGAGTATGCGGATATTTTTGTAAA
AACACAAATTCACACTCTCCTGAGCAGTAATTGGCCTTATATCTTTTGGG
TGCGATAATCCAGTCCCATCCAAAGGCTTCAAAATCGACCGTGAGGGGGT
AGCGGCAGCACCGGGATTCCGTGGAGTGCTCATCGCAGTCAAGCCCAAAG
TCTCTCCGGGACCTCTTGGGTGTGTCTGTCACCTTGACTTCTAAAAAGGG
ATTCTGTGTGAAAAGGAAAGAACAATTATGTAAATAGAGCCTGAAATCCT
TCCTACCTTAAAAATCATTATTAGAAAAACAAACCAACCAATCAACTATC
CAACCCCATAATTTTTACGCCTTTTTTTTAAAAAAAGAACTGCCCAATTA
AGGAATTTTTATATACCCCACACCTCCTTTTTCCCCTCCTGGCCCCTAAG
GACCCTAAATAGTTTCCTGGATTTCCCTGGGGGTTCTTCCCTTTTTGGCC
CCTAAAAAGTCTTGTCCCTCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATAATTTGTAGCATGATACATCA
GTGACCATAGGGTGCAGTCATTTTGGAAGACTCATGGGGTTGAGTCCAAG
CAGGTGGCTGTATGATTAAAACAGTATGCATCTTTTCTACTAATTCCCTA
TGGGTTTTTGATGCATGCAGGTCAAAATTGTGTTCCCTGCTCTCAGGAGA
CTTGTACTACCTAAGAGTTGTTACTAAAGTATTTGTTAACTATGTTATGG
TCCTTTGCAGATACAAAATATTTTTAGATATTTTAGATAAATATATCCTC
AGTTACTTAAGGAAAAAGAAGTTGAAATCAGTCAACATTAGAATGTTGAA
TTGAAAAGCAAGTACCTGTGAGGTGTGGTGGTGCCCACCTTTAATCCCAG
CACTCAGGAGGCAGAGCCATATGGATCTCTCTGAGCTCCAGGCCAGCCTG
GTCCACTTAGCATGTTCTAGGGCAGCCAGAGCCACATAATGAAGATACCC
TGTTTCCAAATAAAAAGAAAAAGTACCAACTATAACAACCAACAAATACC
CAGAGGAATTGCTTCTCAAACTACTTTTGTTTCTAAAATTGAAAAAAACT
TTGATCATAAGACTATGTTTTACTGTATAGGCCAGGTTGGGCAGTTTTCT
GAATGGCTGGGGATACTGCCCTTACCCCACCAAAATCTGCTTAAATCACA
CTTTTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_j13.b1 MSMg01no367_j13.b1 CHROMAT_FILE:
MSMg01no367_j13.b1 PHD_FILE: MSMg01no367_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:48 2005
         (525 letters)



>mm_chr1_53122820_53123744
          Length = 925

 Score =  992 bits (513), Expect = 0.0
 Identities = 519/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagtttcgcaattgaggggaagaccttccatgacttgggaagtttctaaccta 64
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 725 gaattcacagtttcgaaattgaggggaagaccttccatgacttgggaaatttctaaccta 666

                                                                       
Query: 65  atgcaaagctcatgagcacccacagcggtctactaccatggctggaattttcccatatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 atgcaaagctcatgagcacccacagcggtctactaccatggctggaattttcccatatat 606

                                                                       
Query: 125 tatttgttctttgccattaaaatatagcatattaatgggagacatttttgtcggagtgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tatttgttctttgccattaaaatatagcatattaatgggagacatttttgtcggagtgca 546

                                                                       
Query: 185 gcaagggcctgctgagcctctggggtttgcttggtgcacaagatgagtatgcggatattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gcaagggcctgctgagcctctggggtttgcttggtgcacaagatgagtatgcggatattt 486

                                                                       
Query: 245 ttgtaaaaacacaaattcacactctcctgagcagtaattggccttatatcttttgggtgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttgtaaaaacacaaattcacactctcctgagcagtaattggccttatatcttttgggtgc 426

                                                                       
Query: 305 gataatccagtcccatccaaaggcttcaaaatcgaccgtgagggggtagcggcagcaccg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gataatccagtcccatccaaaggcttcaaaatcgaccgtgagggggtagcggcagcaccg 366

                                                                       
Query: 365 ggattccgtggagtgctcatcgcagtcaagcccaaagtctctccgggacctcttgggtgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggattccgtggagtgctcatcgcagtcaagcccaaagtctctccgggacctcttgggtgt 306

                                                                       
Query: 425 gtctgtcaccttgacttctaaaaagggattctgtgtgaaaaggaaagaacaattatgtaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtctgtcaccttgacttctaaaaagggattctgtgtgaaaaggaaagaacaattatgtaa 246

                                                    
Query: 485 atagagcctgaaatccttcctaccttaaaaatcattattag 525
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atagagcctgaaatccttcctaccttaaaaatcattattag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no367_j13.g1 MSMg01no367_j13.g1 CHROMAT_FILE:
MSMg01no367_j13.g1 PHD_FILE: MSMg01no367_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:48 2005
         (500 letters)



>mm_chr1_52974154_52975054
          Length = 901

 Score =  915 bits (473), Expect = 0.0
 Identities = 494/501 (98%), Gaps = 1/501 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcataatttgtagcatgatacatcagtgaccatagggtgcagtcattttggaagactcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcataatttgtagcatgatacatcagtgaccatagggtgcagtcattttggaagactcat 260

                                                                       
Query: 61  ggggttgagtccaagcaggtggctgtatgattaaaacagtatgcatcttttctactaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggttgagtccaagcaggtggctgtatgattaaaacagtatgcatcttttctactaatt 320

                                                                       
Query: 121 ccctatgggtttttgatgcatgcaggtcaaaattgtgttccctgctctcaggagacttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctatgggtttttgatgcatgcaggtcaaaattgtgttccctgctctcaggagacttgt 380

                                                                       
Query: 181 actacctaagagttgttactaaagtatttgttaactatgttatggtccttt-gcagatac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 actacctaagagttgttactaaagtatttgttaactatgttatggtccttttgcagatac 440

                                                                       
Query: 240 aaaatatttttagatattttagataaatatatcctcagttacttaaggaaaaagaagttg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatatttttagatattttagataaatatatcctcagttacttaaggaaaaagaagttg 500

                                                                       
Query: 300 aaatcagtcaacattagaatgttgaattgaaaagcaagtacctgtgaggtgtggtggtgc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatcagtcaacattagaatgttgaattgaaaagcaagtacctgtgaggtgtggtggtgc 560

                                                                       
Query: 360 ccacctttaatcccagcactcaggaggcagagccatatggatctctctgagctccaggcc 419
            |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||| 
Sbjct: 561 acacctttaatcctagcactcaggagaaagagccatatggatctctctgagctccaggct 620

                                                                       
Query: 420 agcctggtccacttagcatgttctagggcagccagagccacataatgaagataccctgtt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcctggtccacttagcatgttctagggcagccagagccacataatgaagataccctgtt 680

                                
Query: 480 tccaaataaaaagaaaaagta 500
           |||||| ||||||||||||||
Sbjct: 681 tccaaacaaaaagaaaaagta 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 901
Length adjustment: 10
Effective length of query: 490
Effective length of database: 891
Effective search space:   436590
Effective search space used:   436590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)