Query= MSMg01no367_k04.b1 MSMg01no367_k04.b1 CHROMAT_FILE:
MSMg01no367_k04.b1 PHD_FILE: MSMg01no367_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:51 2005
(540 letters)
>mm_chr1_155077817_155078755
Length = 939
Score = 864 bits (447), Expect = 0.0
Identities = 471/479 (98%), Gaps = 1/479 (0%)
Strand = Plus / Plus
Query: 62 aaacatcttgatattaaccagaaacaatctagttacgttcactgggacaacatctccaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaacatcttgatattaaccagaaacaatctagttacgttcactgggacaacatctccaaa 321
Query: 122 cacctcaaaggaaatgttgtaccaaagctcttattctgatagcaacacttagctaaaagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cacctcaaaggaaatgttgtaccaaagctcttattctgatagcaacacttagctaaaagt 381
Query: 182 tacatttcatttttctaattctaattagcttactgtatatagaactggccatccctaacc 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tacaattcatttttctaattctaattagcttactgtatatagaactggccatccctaacc 441
Query: 242 cggaatcccaaccctgttatgtttttagcactactgcaagaccacaggaggagaatttca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cggaatcccaaccctgttatgtttttagcactactgcaagaccacaggaggagaatttca 501
Query: 302 cacctgctcccatgtgacggccgctatcaaactgcagatacactacaaatacgatgctac 361
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 502 cacctgctcccatttgacggccgctatcaaactgcagatgcactacaaatacgatgctac 561
Query: 362 attttagcctatgtgttagggaacataagtgaactttgtgttgagactggaatctaatcc 421
||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct: 562 attttaggctatgtgttagggaacacacgtgaactttgtgttgagactgga-tctaatcc 620
Query: 422 ataatctcattatgtattcaaatgttcaaaaactatgcctctcaagtcccaaacacttct 481
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 ataatctcattatgtattcaaatgttcaaaaactatgtctctcaagtcccaaacacttct 680
Query: 482 ggtccctaagcttctagatagggttattcagtctgcacattctccctttaggcccaggt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtccctaagcttctagatagggttattcagtctgcacattctccctttaggcccaggt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space: 492370
Effective search space used: 492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_k04.g1 MSMg01no367_k04.g1 CHROMAT_FILE:
MSMg01no367_k04.g1 PHD_FILE: MSMg01no367_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:51 2005
(285 letters)
>mm_chr1_155223497_155224181
Length = 685
Score = 532 bits (275), Expect = e-155
Identities = 281/283 (99%)
Strand = Plus / Minus
Query: 1 aggacccaataagataggataggattattttagataagtttaatcaggctttttacaaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 483 aggacccaataagataggataggattattttagataaatttaatcaggctttttacaaat 424
Query: 61 tcaaaccccacccacattcccgctcagtgtgatacctctgtgaacaaaagctcgaagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcaaaccccacccacattcccgctcagtgtgatacctctgtgaacaaaagctcgaagtgg 364
Query: 121 agtgaacgcttttcgctttttgcttttgggagattccttctcacaagtaaacacaatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agtgaacgcttttcgctttttgcttttgggagattccttctcacaagtaaacacaatggg 304
Query: 181 acagtgaggggagcagtggtgttcacaggtgtgggctagagtctccctcagctgacttac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acagtgaggggagcagtggtgttcacaggtgtgggctagagtctccctcagctgacttac 244
Query: 241 catcatccctttgaatttaaagctgggggtggagaggggtggg 283
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 243 catcaaccctttgaatttaaagctgggggtggagaggggtggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
