Query= MSMg01no367_k10.b1 MSMg01no367_k10.b1 CHROMAT_FILE:
MSMg01no367_k10.b1 PHD_FILE: MSMg01no367_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:52 2005
(504 letters)
>mm_chr1_3618469_3619372
Length = 904
Score = 920 bits (476), Expect = 0.0
Identities = 494/500 (98%)
Strand = Plus / Minus
Query: 5 gaattcaagccaccatttctggcctcctgggtaaattttgcaaggcactgtaaatcttaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gaattcaagccaccatttctggcctcctgggtaaattttgcaaggcactgtaaatcttaa 485
Query: 65 taatcatatgaacaccagattgggaaaaagacagaggcaagagaagctgtggctgcagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 taatcatatgaacaccagattgggaaaaagacagaggcaagagaagctgtggctgcagag 425
Query: 125 agagaactggggatatgaggtggatttctatgaccaactccatctgaggcatgacgtcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 agagaactggggatatgaggtggatttctatgaccaactccatctgaggcatgacgtcag 365
Query: 185 tcacactgcaaactctgtctcctcactgcctgagacatgactggattgtatggtgatcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcacactgcaaactctgtctcctcactgcctgagacatgactggattgtatggtgatcat 305
Query: 245 cgaacagccacatatgacagtgcaggaagcataccataggaatcctagtacaggtgtggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 304 cgaacagccacatatgacagtgcaggaagcataccataggaatcctagtacgggtgtggg 245
Query: 305 atagcatgacaaaagaagtccacagtgatttggaatgcagtttttaatatatttagatat 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atagcatgacaaaagaagaccacagtgatttggaatgcagtttttaatatatttagatat 185
Query: 365 tttttataatgataaaacatgttccatataaaaattaggaagtttagaaaaatttaaacc 424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 184 tttttataatgataaaacatgttccgtataaaaattaggaagtttagaaaaatttaaacc 125
Query: 425 attatgctcattatcactatttttctactttgtaaaagtgtaaatataaaatctctctat 484
|||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 124 attatgctcattattactatttttctactttgtaaaagtggaaatataaaacctctctat 65
Query: 485 ttcgactaatagaaagaatt 504
||||||||||||||||||||
Sbjct: 64 ttcgactaatagaaagaatt 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_k10.g1 MSMg01no367_k10.g1 CHROMAT_FILE:
MSMg01no367_k10.g1 PHD_FILE: MSMg01no367_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:52 2005
(543 letters)
>mm_chr1_3417993_3418935
Length = 943
Score = 980 bits (507), Expect = 0.0
Identities = 534/543 (98%), Gaps = 2/543 (0%)
Strand = Plus / Plus
Query: 1 tctttcattaacttgtggcacattaagcaatttagctgttaccaacagttatttttactg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tctttcattaacttgtggcacattaagcaatttagctgttaccaacggttatttttactg 260
Query: 61 tctgccaaataaagtaaaatttggctgagaagctttagttagacatcattaataaacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgccaaataaagtaaaatttggctgagaagctttagttagacatcattaataaacaat 320
Query: 121 gatccctgaaagtgctattttcttctgttgcctggctacaaagctttttaagtagaggta 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatccccaaaagtgctattttcttctgttgcctggctacaaagctttttaagtagaggta 380
Query: 181 tgtttatgatacctctatggccagtacaatccttatttgctatcacaagatgttctccat 240
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 381 tgtttatgatacctctatggccagtacaatcattacttgctatcacaagatgttctccat 440
Query: 241 tgggcatggagggaaccacaatcacaccttatatattggtgcatgcctatagacccagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggcatggagggaaccacaatcacaccttatatattggtgcatgcctatagacccagtt 500
Query: 301 gttaaggaagctgaagggatagagtttctggatccaagccctctaatgattgtgattatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttaaggaagctgaagggatagagtttctggatccaagccctctaatgattgtgattatt 560
Query: 361 ggcagaaatacttagctttatttctagaaggtagctagagagaaggtattcatgatagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcagaaatacttagctttatttctagaaggtagctagagagaaggtattcatgatagaa 620
Query: 421 cctttgcctaagcctggtttgatagattttatgataagcagagaaaagacctcctccc-t 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 621 cctttgcctaagcctggtttgatagattttatgataagcagagaaaagaccttctcccat 680
Query: 480 ccctctctctgtttctctgtatctctctttcactgtttctctttgtgtgtaagcatatgt 539
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 cc-tctctctgtttctctgtatctctctttcactgtttctctgtgtgtgtaagcatatgt 739
Query: 540 agt 542
|||
Sbjct: 740 agt 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
