Query= MSMg01no367_k17.b1 MSMg01no367_k17.b1 CHROMAT_FILE:
MSMg01no367_k17.b1 PHD_FILE: MSMg01no367_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:54 2005
(520 letters)
>mm_chr1_84594140_84595058
Length = 919
Score = 922 bits (477), Expect = 0.0
Identities = 504/513 (98%), Gaps = 1/513 (0%)
Strand = Plus / Plus
Query: 8 aattctcaccaataccgtggaggactctgattgctcactcacgtcagcaaacgaccaggt 67
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aattctcaccaatgcagtggaggactctgattgctcactcacgtcagcaaacgaccaggt 267
Query: 68 taacagaacacaagctgcatcagactttcctagcattcctgatgagttgagaaaccttaa 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taacagaacacaagctgcatcagactttcctagcattcctgatgagttgagaaaccttaa 327
Query: 128 tggaacctatccccagcactaatagaaaggcatctgacagggctggttacagccagcagg 187
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 328 tggaacctatccccagcactgatagaaaggcacctgacagggctggttacagccatcagg 387
Query: 188 gactcctgtatggtcaaggaggagaattctaggtacaaaccatcagctgacatcaggctt 247
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 388 gactcctgtatggtcaaggaggagaattctaggtac-aaccatcagctgacatcagactt 446
Query: 248 ggacggagctagctgtccacaggaatgcccgctgagagagctgtccctctgaaggttact 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggacggagctagctgtccacaggaatgcccgctgagagagctgtccctctgaaggttact 506
Query: 308 gcggatccagaactgagtgaaacattctagatttgttgtcctttgtccttggccagaatg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 507 gcggatccagaactgagtgaaacattctagatttgttgtcctttgtccttggccagagtg 566
Query: 368 gccagaatatggatgccaccagtttaaccttgaccaatatctgccatttgcaaatgttaa 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gccagaatatggatgccaccagtttaaccttgaccaatatctgccatttgcaaatgttaa 626
Query: 428 accagttctttgttcctcagtccttacctttaggccttgtaaatatctatctatgaagga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 accagttctttgttcctcagtccttacctttaggccttgtaaatatctatctatgaagga 686
Query: 488 ctctggtctttgattttcattgtcctatctatg 520
||||||||||||||||||||||||||| |||||
Sbjct: 687 ctctggtctttgattttcattgtcctacctatg 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space: 463590
Effective search space used: 463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_k17.g1 MSMg01no367_k17.g1 CHROMAT_FILE:
MSMg01no367_k17.g1 PHD_FILE: MSMg01no367_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:54 2005
(489 letters)
>mm_chr1_84777449_84778337
Length = 889
Score = 946 bits (489), Expect = 0.0
Identities = 489/489 (100%)
Strand = Plus / Minus
Query: 1 caagctaaaatgcatgacctttcaatacaggtcttagaaaccaagtacatgggtacacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caagctaaaatgcatgacctttcaatacaggtcttagaaaccaagtacatgggtacacca 630
Query: 61 ttgtcttctccctaagtattaaaagaatttaatttgtatggataacattccaaggtttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttgtcttctccctaagtattaaaagaatttaatttgtatggataacattccaaggtttaa 570
Query: 121 aaggagaatagggaaggggaatttgatcttcaatatattattgagtataaatgcatcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaggagaatagggaaggggaatttgatcttcaatatattattgagtataaatgcatcaag 510
Query: 181 ggaatatagtgcgctttattgtcattcacatttaaaatcagtaaatagatacttgtggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaatatagtgcgctttattgtcattcacatttaaaatcagtaaatagatacttgtggga 450
Query: 241 tgttgactgttgcagaagatacacatggtgttaactgttattagaggagcatttgggttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgttgactgttgcagaagatacacatggtgttaactgttattagaggagcatttgggttt 390
Query: 301 aatatgctttgtgggtggggtcctttatggatagtacaaattcctctggctgtaaaatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aatatgctttgtgggtggggtcctttatggatagtacaaattcctctggctgtaaaatac 330
Query: 361 ttcagggaaaatgtgctgggaaaatttctgggaaaaaaatttctctacctgtaaaatacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcagggaaaatgtgctgggaaaatttctgggaaaaaaatttctctacctgtaaaatacg 270
Query: 421 gacctaaatttgcatagaggactgatagaggacttatttgtcgtcatttcaactactttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gacctaaatttgcatagaggactgatagaggacttatttgtcgtcatttcaactactttt 210
Query: 481 tgaagtcag 489
|||||||||
Sbjct: 209 tgaagtcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
