BAC Information

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BAC

Clone NameMSMg01-367M01
Chromosome1 (Build37)
Map Location 33,842,821 - 33,843,145
singlet/doubletsinglet
Overlap geneZfp451
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2
Downstream geneOTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367M01.T7 (MSMg01no367_m01.b1)MSMg01-367M01.TJ (MSMg01no367_m01.g1)
ACCAG475146AG475147
length711771
length of high quality
(start - end)
244 (16 - 259)327 (80 - 406)
definitionCHROMAT_FILE: MSMg01no367_m01.b1 PHD_FILE: MSMg01no367_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:00 2005CHROMAT_FILE: MSMg01no367_m01.g1 PHD_FILE: MSMg01no367_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATTTCCCCAGCTACATAGACTCCCGTTACAAAAAAGAAAAGAAAAATA
TAGTTTAAGTTCACAATGAAAACTGGAATGGGGTCGGTGAGATTGTGCAG
AAAATACAAGCATTCATCCTACAATCTGATGACCTTAGCTTAACAGAAGG
AGAGAACCAACTCCCAGAAGCTGTCCTCTGACTCTACATGTGTGCCATAG
CATACTCGTGCACACATGCACACACACATGCAAACACGCGCGCGTGCGCG
TGCACACACACTTTTTTACAGAGGAGGGACACTATATAGAATCAAATTAT
GCTTCTGCCTTTAGTTAATAACTGTCTTAGGGTTTCTATTGCTGTGAAGA
ATTACCATGACCAAGGCAACTCTTATAAAAAGAAATAAAGCATTCGACTG
GGGGCTTGCTTACACTTTAAAGCCTTAGTCCATTATCATCATGGTGGTGA
GCATGGCATTAGCATGTTAGCCTGTCTGATGTCTGATCCGCATCTGATTG
TTACCTTCTGCTCCCTCGTCTATTTTCACATATACTTTTTCGTATTTTTG
CGTGCTCTTTCCTATTCCCCCTTTTTCCTTCTTATCTCTACTGACCCATT
TTGTTTCCCCTTCCCCTTTTACCTACTTTTTTTCTTTTTCCCACCCTTAC
CCTCTCATTCCCTCCTTTTTTCCTCCTCACTTTCTCACTTTTCCCCTTTT
TCTTCTTTTTG
GTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTGAGTATTCTACTTAAAC
ACATTTTTGGTGTTTGTGAGTTTCTGGTGTTTTACAGTTTGTATGTGCAT
GTGCATACCTATGGAGGATAGAGGCCACCCTTGGACCATCCTCCTTGTGT
TTTGAGACAAGATCTGTTTTTGGCTTGGTGCTCATGGATCCCACCAGGCT
GGCTGTGTGGTGTGCTCCAGGGCTGGCTTGGATGTGTGGGCCCTAGGGAT
TGGGCTCTGCTCAGGTCCTCATGCTCTGGATCATGACTCACCGAGTCATC
CCCCAGCCCCTGATACTGCTGTTACTAAAGAAGATTCTATCTAATGATTA
TTTACTAAGAAACTGTTGCGGTTTGTGAAGTTGAGATATTTGCTTTGTGT
TATGTAAGTTCACATTACTATGTTGTCCCTTTACCAGTTCTGTATGATAG
TTACCCTTATTTTCTACTATGTACTTGTTTTTATCCCGACCGATTCCTCA
TTCTTGTATCTCGTAATTTTACCCTACATATGTTTTTCTTTACTCTATCC
TTTTTTTTTCCCCCTTTTATCTCTACCTTTCTTTGCCTTTCTCCACTCTG
TCCCTTTTTTCCTCTTTTCCTCCCCCCCCATTGGTACTTTTAATTTATCT
TTTTCCCTCTTTTTCTTATCTCCCCTCTTGTTTTGCTCTTTTTTTACAAT
TCCCCCTTATTTCCTTATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_m01.g1 MSMg01no367_m01.g1 CHROMAT_FILE:
MSMg01no367_m01.g1 PHD_FILE: MSMg01no367_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:00 2005
         (327 letters)



>mm_chr1_33842428_33843154
          Length = 727

 Score =  621 bits (321), Expect = 0.0
 Identities = 324/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgagtattctacttaaacacatttttggtgtttgtgagtttctggtgttttacagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tagtgagtattctacttaaacacatttttggtgtttgtgagtttctggtgttttacagtt 659

                                                                       
Query: 61  tgtatgtgcatgtgcatacctatggaggatagaggccacccttggaccatcctccttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tgtatgtgcatgtgcatacctatggaggatagaggccacccttggaccatcctccttgtg 599

                                                                       
Query: 121 ttttgagacaagatctgtttttggcttggtgctcatggatcccaccaggctggctgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttttgagacaagatctgtttttggcttggtgctcatggatcccaccaggctggctgtgtg 539

                                                                       
Query: 181 gtgtgctccagggctggcttggatgtgtgggccctagggattgggctctgctcaggtcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtgtgctccagggctggcttggatgtgtgggccctagggattgggctctgctcaggtcct 479

                                                                       
Query: 241 catgctctggatcatgactcaccgagtcatcccccagcccctgatactgctgttactaaa 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 478 catgctctggatcatgactcactgagtcatcccccagcccctgatactgctgttactaaa 419

                                    
Query: 301 gaagattctatctaatgattattta 325
           |||||||||||||||||||||||||
Sbjct: 418 gaagattctatctaatgattattta 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)