BAC Information

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BAC

Clone NameMSMg01-368A18
Chromosome1 (Build37)
Map Location 92,114,631 - 92,300,531
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383542, EG665688, Centg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368A18.T7 (MSMg01no368_a18.b1)MSMg01-368A18.TJ (MSMg01no368_a18.g1)
ACCAG475369AG475370
length738737
length of high quality
(start - end)		550 (47 - 596)514 (70 - 583)
definitionCHROMAT_FILE: MSMg01no368_a18.b1 PHD_FILE: MSMg01no368_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:23 2005CHROMAT_FILE: MSMg01no368_a18.g1 PHD_FILE: MSMg01no368_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,300,134 - 92,300,531)(92,114,631 - 92,115,144)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATAGAGTTCTTTCTACTACTCCTGTTGTTGATACCACTGATGTC
TCAACCATCAAGTCCAGTGAGGACCAGGACTCAGGTGGTAACCCTGGAAA
ATCAGGCAAACTTGACTTTTCTAGAATATTTTCTTCCTCGGCTTCTGAGG
TCTTTCTTTCCGAGGGCACACCTGAAGCCTGTTTCTTCCATGTGTCCCTC
TTCGCCGGTCTCTTCCTCCCCCTTCACTTTTCTTCTCTTCGTCCTCATCC
TCTCCCTCCTTCCCCCTCCCTGTGCTTTCCCTCTTTCTCATCCTTCTTCC
CTCTTCTTGTATGTATGTCTATCTCTTTCTCTGTATTTTCCTTCTCCCAG
AGTTTCCATGGTTCCCAGGGCCACACCCCTCTCCTTCCTCTCTCTCTCCT
GAGTATAGTCAGAGGCTGTACCTTGGTGCCACAGGCAAGCACACCTACTT
TAAAATTAATTCTGCTCCAACTATCTGGATAGAATTAGCCAAGTCACCCA
CCTCTCCAGGTGCCACATTCCTTATCTCTGAAAGGGAGGTCTCAGGCCCA
CCTCGTGGGCTCTGTGGAGAGTTAGTTAATGTGTTCATTCATGCAGGAGA
AGTGCCATGCACACGCCAGAAGAGACAAATGCCAACACCTGGGTAATGCG
GCTCTGGGGAAACTCTCTCCGGATTCACAATTAATTGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTCACATGGTGTGCTAGCTAGTTTTATGTC
AACTAGACACAAGCTAGAAGTCATTTTTTTGGAAGAAGGCACTTCAACTG
AGAAAATGTTCCCACTAGACTGCCTTGTGGGCCAGCCTGTGGTACATTTT
CTTGGTTTGCGACTGATATGCAAAAGCCCAGTTGACTATGGGTAGTGTCA
TCTCTGGGATGATGTCCCTGGGTTCTATAAGAAAGCAGACTGAGCAAGCC
ATGGAGAGCAAGCTGGTAAGCACTCCTCTGTGGCTTCTGCTTTCGTTCCT
GCCTCCAGGTTCCTGCCTTGAGTTCTTGTCCTAACTTCCCTCAGAGTTAG
ACTGTTGCCGGGAATTGGAAGCTGAAATGTACCCTTTTCACAGCAATAGG
AGCCCTAACTGTGACACTTGGGACCCACTCACATGGCTTCCTTTGTGGAG
GAGGGTAGATCTTTCAAAACATCAACCTCCAGCCTCCAAAGTATGTAAGC
CACTTGGTGCCTTACCAACCAGTGCCACTTGGACTTTAGGAGGTGTATAG
GGTGTGCCCCAGGGTCAGGAGAAAAGCAGTTTTTGCTTCCCCCGTGCCTT
CTTCCAGGGAGAAGTGCGGAAAAATGAACTTTACTCTCTGGCCCTGTACT
GGAGAAGCAGAAATTTTCCGTACACTAAGGAATGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_a18.b1 MSMg01no368_a18.b1 CHROMAT_FILE:
MSMg01no368_a18.b1 PHD_FILE: MSMg01no368_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:23 2005
         (550 letters)



>mm_chr1_92300134_92301083
          Length = 950

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatagagttctttctactactcctgttgttgataccactgatgtctcaaccatca 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaattcatagagctctttctactactcctgttgttgataccactgatgtctcaaccatca 339

                                                                       
Query: 65  agtccagtgaggaccaggactcaggtggtaaccctggaaaatcaggcaaacttgactttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agtccagtgaggaccaggactcaggtggtaaccctggaaaatcaggcaaacttgactttt 279

                                                                       
Query: 125 ctagaatattttcttcctcggcttctgaggtctttctttccgagggcacacctgaagcct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctagaatattttcttcctcggcttctgaggtctttctttccgagggcacacctgaagcct 219

                                                                       
Query: 185 gtttcttccatgtgtccctcttcgccggtctcttcctcccccttcacttttcttctcttc 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 218 gtttcttccatgtgtccctcttcgcctgtctcttcctcccccttcacttttcttctcttc 159

                                                                       
Query: 245 gtcctcatcctctccctccttccccctccctgtgctttccctctttctcatccttcttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 158 gtcctcatcctctccctccttccccctccctgtgctttccctctttctcatccttctccc 99

                                                                       
Query: 305 ctcttcttgtatgtatgtctatctctttctctgtattttccttctcccagagtttccatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ctcttcttgtatgtatgtctatctctttctctgtattttccttctcccagagtttccatg 39

                                                 
Query: 365 gttcccagggccacacccctctccttcctctctctctc 402
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  gttcccagggccacacccctctccttcctctctctctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_a18.g1 MSMg01no368_a18.g1 CHROMAT_FILE:
MSMg01no368_a18.g1 PHD_FILE: MSMg01no368_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:23 2005
         (514 letters)



>mm_chr1_92114431_92115344
          Length = 914

 Score =  932 bits (482), Expect = 0.0
 Identities = 506/514 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcacatggtgtgctagctagttttatgtcaactagacacaagctagaagtcatttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcacatggtgtgctagctagttttatgtcaactagacacaagctagaagtcatttttt 260

                                                                       
Query: 61  tggaagaaggcacttcaactgagaaaatgttcccactagactgccttgtgggccagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaagaaggcacttcaactgagaaaatgttcccactagactgccttgtgggccagcctg 320

                                                                       
Query: 121 tggtacattttcttggtttgcgactgatatgcaaaagcccagttgactatgggtagtgtc 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtacattttcttggtttgtgactgatatgcaaaagcccagttgactatgggtagtgtc 380

                                                                       
Query: 181 atctctgggatgatgtccctgggttctataagaaagcagactgagcaagccatggagagc 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 atctctgggatgatgtccctgggttctataagaaagcagactgatcaagccatggagagc 440

                                                                       
Query: 241 aagctggtaagcactcctctgtggcttctgctttcgttcctgcctccaggttcctgcctt 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aagctggtaagcactcctctgtggcttctgctttagttcctgcctccaggttcctgcctt 500

                                                                       
Query: 301 gagttcttgtcctaacttccctcagagttagactgttgccgggaattggaagctgaaatg 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gagttcttgtcctaacttccctcagagttagactgttgcctggaattggaagctgaaatg 560

                                                                       
Query: 361 tacccttttcacagcaataggagccctaactgtgacacttgggacccactcacatggctt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 561 tacccttttcacagcaataggagccctaactgtgacacttgggacccacttacacggctt 620

                                                                       
Query: 421 cctttgtggaggagggtagatctttcaaaacatcaacctccagcctccaaagtatgtaag 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 cctttgtggaggagggtagatctttcaaaacatcagcctccagcctccaaagtatgtaag 680

                                             
Query: 481 ccacttggtgccttaccaaccagtgccacttgga 514
           ||||||||||||||||||||||||| ||||||||
Sbjct: 681 ccacttggtgccttaccaaccagtgacacttgga 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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