BAC Information

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BAC

Clone NameMSMg01-368A24
Chromosome1 (Build37)
Map Location 67,476,597 - 67,612,408
singlet/doubletdoublet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368A24.T7 (MSMg01no368_a24.b1)MSMg01-368A24.TJ (MSMg01no368_a24.g1)
ACCAG475381AG475382
length754765
length of high quality
(start - end)		471 (48 - 518)449 (68 - 516)
definitionCHROMAT_FILE: MSMg01no368_a24.b1 PHD_FILE: MSMg01no368_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:24 2005CHROMAT_FILE: MSMg01no368_a24.g1 PHD_FILE: MSMg01no368_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,476,597 - 67,477,063)(67,611,960 - 67,612,408)
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTTACTAATGTTTGATATGCATCTGATTGTTCCTCTAATAAA
CTAAATGTAATTAAAAAAAGAGCAGGGCCATTGCATTTTAATATCTTGGA
GGCTTCCCCGTGGAAGAGTCAGCAAACAAGGAGAGAATGTGAGGATTCAG
CTCCCAGGCACCTGCCAGGCTAGCTTCCTCAGGATTAACAGCGTTGCATC
AGGTTATTAGAGGAAACATAAATACTTTTGAGGCTGTGTGGGTAGTTACG
ATATCACGTTTTATTATCTTCTCCTAAAATGGAATTACTCATTGTAATTG
CTTGCCAGTCACAGGCCAACAAACATGCCAGAAGCAATCCTACATTTTTG
GGGAGAGAGGGTTATAAAGGAAAAGCAACTGACCTAGAGAATGTCTTTAA
GGACACACTATTGCATATTTGTAATTATCATAACTTGAGGTTTTATGGCA
CTTTACATCTTCAAGGGTGGCTTGGATAGGCACATCCTTGCACCCTGCAA
TTTGAAGTGAGCATAGCAGCTATTAAAATTCCCATGTNGACANGAAATGT
GATGGGAAGAATGTAGTGATCTGGCTCAGAGCTTGCAACTANTGAGTGCA
AGGTCAGACTGGACTACAACTTCCNTCTTCACANCTGTTCCCTCTGCTGT
TCATGCANCCTGCTGAATACAAAAAAAGCCATGCAAGGATACTCCTGGAA
GTAA

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCTTTAGCTCTGTTTCCCATTTTTAATAAGG
TTATTTGATTGTCTGGAGTCTATTTTCTTGAGTTCTTTGTAAATATTGGA
AACACAATAATTTCAAAACCTTTTTTCTAAGTAGCAAACTAATGACCTTT
TTACTTTCAGTGTTTTATAAAAGAGTACTGGATTTTTAGTAAAATCTATC
TTAACTTTGTCTAACATAATATTTAGTTGGTCAAATAGCCATCAAAATCA
AAACTACCCCTTGTTTGATTAGGCTTCCCATGAGACTAAGTTCTGAAAGA
AAGATGAAATTTCGAGACCTATAAGCCATATAAAGTACTCAGAAATTGCT
GTTTGCTTGTGAGCCTAGAGGCTGCCTGGGGCTGAGAACAAAGAAAAACA
AACCTGGGCATACCCAGTAGTGAAAACATTCCTGGGAACAGCTTGACCAT
AAAGATAAAGAGGAATGTGAGGACATATCAGGGCTATCTGAACTGAGTCA
AATTGACCAGATACTTTGCTAGCATTGATAAACATCCCACTCACAGAACT
CTGACACCCTGGACTGCACGNACATATATTTTTCTGCTGATGTTGGATAA
ACCCATATGTGGTGCTATGCTGAATTCCCCACTCCTAGCCCTTTACCCAT
AAAAACCCCAACTTTCTATCTTGGGGGTGAAACAACGGCCCCCGCGGAGA
AATATTTCACCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_a24.b1 MSMg01no368_a24.b1 CHROMAT_FILE:
MSMg01no368_a24.b1 PHD_FILE: MSMg01no368_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:24 2005
         (471 letters)



>mm_chr1_67476393_67477263
          Length = 871

 Score =  903 bits (467), Expect = 0.0
 Identities = 467/467 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttactaatgtttgatatgcatctgattgttcctctaataaactaaatgtaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttactaatgtttgatatgcatctgattgttcctctaataaactaaatgtaat 264

                                                                       
Query: 65  taaaaaaagagcagggccattgcattttaatatcttggaggcttccccgtggaagagtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaaaaagagcagggccattgcattttaatatcttggaggcttccccgtggaagagtca 324

                                                                       
Query: 125 gcaaacaaggagagaatgtgaggattcagctcccaggcacctgccaggctagcttcctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaaacaaggagagaatgtgaggattcagctcccaggcacctgccaggctagcttcctca 384

                                                                       
Query: 185 ggattaacagcgttgcatcaggttattagaggaaacataaatacttttgaggctgtgtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggattaacagcgttgcatcaggttattagaggaaacataaatacttttgaggctgtgtgg 444

                                                                       
Query: 245 gtagttacgatatcacgttttattatcttctcctaaaatggaattactcattgtaattgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtagttacgatatcacgttttattatcttctcctaaaatggaattactcattgtaattgc 504

                                                                       
Query: 305 ttgccagtcacaggccaacaaacatgccagaagcaatcctacatttttggggagagaggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgccagtcacaggccaacaaacatgccagaagcaatcctacatttttggggagagaggg 564

                                                                       
Query: 365 ttataaaggaaaagcaactgacctagagaatgtctttaaggacacactattgcatatttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttataaaggaaaagcaactgacctagagaatgtctttaaggacacactattgcatatttg 624

                                                          
Query: 425 taattatcataacttgaggttttatggcactttacatcttcaagggt 471
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taattatcataacttgaggttttatggcactttacatcttcaagggt 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_a24.g1 MSMg01no368_a24.g1 CHROMAT_FILE:
MSMg01no368_a24.g1 PHD_FILE: MSMg01no368_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:24 2005
         (449 letters)



>mm_chr1_67611850_67612698
          Length = 849

 Score =  868 bits (449), Expect = 0.0
 Identities = 449/449 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctttagctctgtttcccatttttaataaggttatttgattgtctggagtctattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttctttagctctgtttcccatttttaataaggttatttgattgtctggagtctattttc 500

                                                                       
Query: 61  ttgagttctttgtaaatattggaaacacaataatttcaaaaccttttttctaagtagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgagttctttgtaaatattggaaacacaataatttcaaaaccttttttctaagtagcaa 440

                                                                       
Query: 121 actaatgacctttttactttcagtgttttataaaagagtactggatttttagtaaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actaatgacctttttactttcagtgttttataaaagagtactggatttttagtaaaatct 380

                                                                       
Query: 181 atcttaactttgtctaacataatatttagttggtcaaatagccatcaaaatcaaaactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atcttaactttgtctaacataatatttagttggtcaaatagccatcaaaatcaaaactac 320

                                                                       
Query: 241 cccttgtttgattaggcttcccatgagactaagttctgaaagaaagatgaaatttcgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cccttgtttgattaggcttcccatgagactaagttctgaaagaaagatgaaatttcgaga 260

                                                                       
Query: 301 cctataagccatataaagtactcagaaattgctgtttgcttgtgagcctagaggctgcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cctataagccatataaagtactcagaaattgctgtttgcttgtgagcctagaggctgcct 200

                                                                       
Query: 361 ggggctgagaacaaagaaaaacaaacctgggcatacccagtagtgaaaacattcctggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggggctgagaacaaagaaaaacaaacctgggcatacccagtagtgaaaacattcctggga 140

                                        
Query: 421 acagcttgaccataaagataaagaggaat 449
           |||||||||||||||||||||||||||||
Sbjct: 139 acagcttgaccataaagataaagaggaat 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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