Query= MSMg01no368_i20.b1 MSMg01no368_i20.b1 CHROMAT_FILE:
MSMg01no368_i20.b1 PHD_FILE: MSMg01no368_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:01 2005
(523 letters)
>mm_chr1_171116320_171117242
Length = 923
Score = 944 bits (488), Expect = 0.0
Identities = 512/524 (97%), Gaps = 8/524 (1%)
Strand = Plus / Plus
Query: 4 ggaattccagtactatccgagagagacggggccagtctgcacaacctcttgtaactaatg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtactaggagagagagacggggccagtctgcacaacctcttgtaactaatg 263
Query: 64 aattctatgtcttagaaagtttctgcctccaaagccaagctgaagtctcctgcggaatat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattctatgtcttagaaagtttctgcctccaaagccaagctgaagtctcctgcggaatat 323
Query: 124 ccaaagttgacttctggcctccatgtgtgagcaagcaaacataactgtgcatgtacttga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaaagttgacttctggcctccatgtgtgagcaagcaaacataactgtgcatgtacttga 383
Query: 184 gtgtgcgtgaacacacacacacacacacacacacacacacgcacacgcacacgcacacgc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgtgcgtgaacacacacacacacacacacacacacacacgcacacgcacacgcacacgc 443
Query: 244 acacacacacacacacacacacaatggggaaggtttt----ataaggaagagaggttttt 299
||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 444 acacacacacacacacacacacaatggggaagg----gcagaaaaggaagagaggttttt 499
Query: 300 catactgctacataatctcttaaaaagatgcagaagttaccctggtaaaatctttataca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 catactgctacataatctcttaaaaagatgcagaagttaccctggtaaaatctttataca 559
Query: 360 gctatgcatacaggtaacaaaacctaaaaactcttggaaaaataaaaactatatagagaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctatgcatacaggtaacaaaacctaaaaactcttggaaaaataaaaactatatagagaa 619
Query: 420 caacaattggtagatccccagagaaagaatataagcaaccattttgaaaggaagatatat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caacaattggtagatccccagagaaagaatataagcaaccattttgaaaggaagatatat 679
Query: 480 tgcacagaagaaatactgtggtgggcttctatatcctgatgggt 523
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgcacagaagaaatactgtggtgggcttctatatcctgatgggt 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_i20.g1 MSMg01no368_i20.g1 CHROMAT_FILE:
MSMg01no368_i20.g1 PHD_FILE: MSMg01no368_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:01 2005
(522 letters)
>mm_chr1_171286449_171287370
Length = 922
Score = 967 bits (500), Expect = 0.0
Identities = 512/522 (98%), Gaps = 10/522 (1%)
Strand = Plus / Minus
Query: 1 tctcctggggttgttccccctgcagagtgcctttatgaacactggtgagatactttgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tctcctggggttgttccccctgcagagtgcctttatgaacactggtgagatactttgtct 793
Query: 61 tcatttatatgaaaaacccagtgaacaaaagtcccagggactgaggagagagagagagag 120
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 792 tcatttatatgaaaaacccagtgaacaaaagtcccagggactgag----------gagag 743
Query: 121 agagagagagagagagagagccagggcctttcaggaactgcttgatgggagaaagaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agagagagagagagagagagccagggcctttcaggaactgcttgatgggagaaagaaaag 683
Query: 181 tgtgcagtatttgggcttctctgttccttccaggatactctgaaggcagatccaaagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgtgcagtatttgggcttctctgttccttccaggatactctgaaggcagatccaaagtga 623
Query: 241 atttgggcaattaggaaaatctcaaatgaagggggatcacgattacccaagttgtctctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atttgggcaattaggaaaatctcaaatgaagggggatcacgattacccaagttgtctctc 563
Query: 301 tctaggtctcctgagacctccaggggatccctaaagagggaatcggggctgtagctctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tctaggtctcctgagacctccaggggatccctaaagagggaatcggggctgtagctctga 503
Query: 361 ggtaccatgaataggagacactaaataaattgtcaagggaggatgcttcttggccatgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggtaccatgaataggagacactaaataaattgtcaagggaggatgcttcttggccatgcc 443
Query: 421 cttcctctgccctggctctctcctcccaacacttcagcaatgtttattaagagatgacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cttcctctgccctggctctctcctcccaacacttcagcaatgtttattaagagatgacaa 383
Query: 481 gtctatcaggcctcctgaggagcctttcacacagagatcttc 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtctatcaggcctcctgaggagcctttcacacagagatcttc 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
