BAC Information

Click to search

BAC

Clone NameMSMg01-368K19
Chromosome1 (Build37)
Map Location 89,675,672 - 89,676,114
singlet/doubletsinglet
Overlap geneAtg16l1
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d
Downstream geneSag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368K19.T7 (MSMg01no368_k19.b1)MSMg01-368K19.TJ (MSMg01no368_k19.g1)
ACCAG475843AG475844
length740787
length of high quality
(start - end)		595 (39 - 633)443 (77 - 519)
definitionCHROMAT_FILE: MSMg01no368_k19.b1 PHD_FILE: MSMg01no368_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:11 2005CHROMAT_FILE: MSMg01no368_k19.g1 PHD_FILE: MSMg01no368_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TATTCTTTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGT
CCACCTTCTTGAATTCTTTATATATATATTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAGGTC
CCATTTGTCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCA
GGAATTTTTCCCCTGTACCCATATTTTCGAGGCTTTTCCCTACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTT
AGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATTCTTC
TACATGATAATCGCCAGTTGTACCAGCACCATTTGTTGAAAATGCTGTCT
TTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGGCCATA
GGTGTGTGGGTTCATTTCTGAGTCTTCAATTCTATTCCATTGGTCTACTT
GTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAG
TACAGCTTTAGGTCACGCATGGTGAATCCACCAAAGGTTCTCTTATCCTT
TGAAAAAGGTTTTGCTATCCTAAGGTTTTTTGGTATTCCN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTATTTTGAATTACATTTTAA
TTTGTTTAATGTATGAGTAGTGGAGTTGGGACTAGTTGAGATCACATGAC
TTGAAGTGCAGCATAGCCTGGAACTCATGGTTCTGCTGCTGTGTCTTCTC
CAGGACTGAGGTAAAAATCCTGGGCTCTTAACACTGAAGCCTTCTCTAGC
TAGGCTCTAGAGCAAAGAGAAAGACTCGGATTACTGCTTTTGATGTTTGT
TTGAGCACAAGCAGTTTATTGAACCTTTGATCTGAATATATTGATTGTTG
GTGAAGCATTGTACCTGTCTGCTCTTTATTTGACTTGCAGGAAAGTGACT
CAGGTAAACCCCTTAGTCTGTTGAAGCCTGCGAGAGTGTTATGCCTTGCT
CCGAGACATGTTATGACAGACGGAATGACTAAAGTGGGCGGAAGATAAAG
CTCAACCATAAGGAAATAAATCTTGGCAGATGTTCTTTGTAAAAGTAATC
AGTTGCAGGTGTAGCTCAACAGTAAAGCACTTGCCTAAGTATTAACTAAC
ATGGTTTTGGGGTTTTGGGGCCAGGAAACACCTCTGGGAAAATGAAAAAA
AAGTATTGGGGAACCTGTAAAAATAATAACTGTTGGGTAAGCAAACCTGT
CGCCCTAGTCATGATGATTTTACTATCCTGGTTGCCCTTCTTAGTTTTTA
ATATCCCCCATCCTTTCTTTCTTCTCTATCCTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_k19.g1 MSMg01no368_k19.g1 CHROMAT_FILE:
MSMg01no368_k19.g1 PHD_FILE: MSMg01no368_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:11 2005
         (443 letters)



>mm_chr1_89675472_89676314
          Length = 843

 Score =  841 bits (435), Expect = 0.0
 Identities = 441/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttattttgaattacattttaatttgtttaatgtatgagtagtggagttgggactagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttattttgaattacattttaatttgtttaatgtatgagtagtggagttgggactagt 260

                                                                       
Query: 61  tgagatcacatgacttgaagtgcagcatagcctggaactcatggttctgctgctgtgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagatcacatgacttgaagtgcagcatagcctggaactcatggttctgctgctgtgtct 320

                                                                       
Query: 121 tctccaggactgaggtaaaaatcctgggctcttaacactgaagccttctctagctaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccaggactgaggtaaaaatcctgggctcttaacactgaagccttctctagctaggct 380

                                                                       
Query: 181 ctagagcaaagagaaagactcggattactgcttttgatgtttgtttgagcacaagcagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagagcaaagagaaagactcggattactgcttttgatgtttgtttgagcacaagcagtt 440

                                                                       
Query: 241 tattgaacctttgatctgaatatattgattgttggtgaagcattgtacctgtctgctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattgaacctttgatctgaatatattgattgttggtgaagcattgtacctgtctgctctt 500

                                                                       
Query: 301 tatttgacttgcaggaaagtgactcaggtaaaccccttagtctgttgaagcctgcgagag 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 tatttgacttgcaggaaagtgactcaggtaaaccccttaatctgttgaagcctgcgagag 560

                                                                       
Query: 361 tgttatgccttgctccgagacatgttatgacagacggaatgactaaagtgggcggaagat 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 tgttatgccttgctccgagacatgttaggacagacggaatgactaaagtgggcggaagat 620

                                  
Query: 421 aaagctcaaccataaggaaataa 443
           |||||||||||||||||||||||
Sbjct: 621 aaagctcaaccataaggaaataa 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |