XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTA
TGTAGTTCCTTCCTCCATTGGAGAAAATAGCCCCTGTCTAACCAGTCGGA
AGGCCTTTCTCAGCACAGCAGTACATCTTTCTTCTCACCACCATGTGTTG
GGGCAACACCATCATCTCTAACAGCCAGTAAGCCATCCCCATTGCTCACT
GTAGTGCCACTCCCATTGAGGATGATCAAACCACAAAACCCTTTCAGCTC
TCGAGTTTTAAAATGTGGAGTACAGCCTTTTAATTAGAGTCTTAAAAGGC
CTTGCTATCATCATAGTTTTCCAGCGAGTACATAATGTGACTGCCGTTTG
GTTATTAATTTGCTCATCCAGATGGGGAAGAAAAAAAAAATACGCCTAAT
GCGGAGGAGAGTTTATACAAATGGAGCTGAAAGTGTTTCATGAATAATAT
TTCTGTCTTCTCGTGTGTTGTTCTGTGGTCATGATGTCAACATCTTTTTC
ATCCCCCAAGAAGAAGAAACTCTAGAGGGTACGATGGCTGAGGAAATGAA
GCCTGCTGCCCTTCCTGGGAATGAGTGTGGGGCTGCTAAACCCTCAGACA
ACCCCCAGGGGCTCAGTGAAAGCCAAGCGGAATCTAGCGCAGAGGCACAG
ATAGTTCCCGAAAAAGTGCCCTGGGAGGGGCTCCTCATGAGAAAAGGGTT
AAAGAAGTCACACAAGGGGGTTCCGAAAGAAAAAAACCCTTTCTCCTGGC
AAGAAA

GCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAACTGGAAGCAACTC
AGATATCTCTCAACCGAAGAACAGATATAGAAAATGTGGTCCATTTACAC
AGTGAAATACTATTCAGCTATTAAAAACAAGGACATCTGGGGGCTGGAGA
GATGGCTCGGTGGTTCAGAGTTCAATTCCCAGCAACCACATGATGGCTCA
CAAGCATCTGTAATGGGATATGATGTTCTCTTCTGGTGGTCTGAAGAGAG
CAACAGTGTATTTAAATACATAAAATATGTACACAAACCTTCTAAAAATG
AGGAGATTGTGAATTTTGCAGGGAAATGGATGAAACTAGAAAATATCATC
CTGAGTGAGGTAACCCAGATCCCAAAGGACATGCATGGTATGTACTCACT
AATAAGTGGATATTAGCCAAAAAGTACAGAAGACCCATAATATAAGCCAC
AGGCTTTAAGAAATTTAACAGGAAGGAAGGTCCAAGTGTGGATGATTCAA
TCCCACTTTAGAAGGAGAACAAAACAATCATGGGACTAAAAGGGAGGGAG
AGAGGGATTGTTGTGGNAAAAGGAAAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNG

Query= MSMg01no368_k21.b1 MSMg01no368_k21.b1 CHROMAT_FILE:
MSMg01no368_k21.b1 PHD_FILE: MSMg01no368_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:11 2005
         (573 letters)



>mm_chr1_66456475_66457447
          Length = 973

 Score = 1079 bits (558), Expect = 0.0
 Identities = 567/570 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttatgtagttccttcctccattggagaaaatagcccctgtctaaccagtcgga 63
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttatgtagggacttcctccattggagaaaatagcccctgtctaaccagtcgga 263

                                                                       
Query: 64  aggcctttctcagcacagcagtacatctttcttctcaccaccatgtgttggggcaacacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggcctttctcagcacagcagtacatctttcttctcaccaccatgtgttggggcaacacc 323

                                                                       
Query: 124 atcatctctaacagccagtaagccatccccattgctcactgtagtgccactcccattgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcatctctaacagccagtaagccatccccattgctcactgtagtgccactcccattgag 383

                                                                       
Query: 184 gatgatcaaaccacaaaaccctttcagctctcgagttttaaaatgtggagtacagccttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatgatcaaaccacaaaaccctttcagctctcgagttttaaaatgtggagtacagccttt 443

                                                                       
Query: 244 taattagagtcttaaaaggccttgctatcatcatagttttccagcgagtacataatgtga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taattagagtcttaaaaggccttgctatcatcatagttttccagcgagtacataatgtga 503

                                                                       
Query: 304 ctgccgtttggttattaatttgctcatccagatggggaagaaaaaaaaaatacgcctaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgccgtttggttattaatttgctcatccagatggggaagaaaaaaaaaatacgcctaat 563

                                                                       
Query: 364 gcggaggagagtttatacaaatggagctgaaagtgtttcatgaataatatttctgtcttc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcggaggagagtttatacaaatggagctgaaagtgtttcatgaataatatttctgtcttc 623

                                                                       
Query: 424 tcgtgtgttgttctgtggtcatgatgtcaacatctttttcatcccccaagaagaagaaac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcgtgtgttgttctgtggtcatgatgtcaacatctttttcatcccccaagaagaagaaac 683

                                                                       
Query: 484 tctagagggtacgatggctgaggaaatgaagcctgctgcccttcctgggaatgagtgtgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctagagggtacgatggctgaggaaatgaagcctgctgcccttcctgggaatgagtgtgg 743

                                         
Query: 544 ggctgctaaaccctcagacaacccccaggg 573
           ||||||||||||||||||||||||||||||
Sbjct: 744 ggctgctaaaccctcagacaacccccaggg 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)