Query= MSMg01no368_l05.b1 MSMg01no368_l05.b1 CHROMAT_FILE:
MSMg01no368_l05.b1 PHD_FILE: MSMg01no368_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:13 2005
(255 letters)
>mm_chr1_71825289_71825943
Length = 655
Score = 460 bits (238), Expect = e-134
Identities = 249/256 (97%), Gaps = 6/256 (2%)
Strand = Plus / Minus
Query: 5 gaattctct------ttcctcttcctcttcctcttcttctccttcctgtcctcttctttc 58
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 512 gaattctctttcctcttcctcttcctcttcctcttcttctccttcctggcctcttctttc 453
Query: 59 tattttacatttgctttacccagtccatgaattgtgaaccatccaaacaatcgcataaaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tattttacatttgctttacccagtccatgaattgtgaaccatccaaacaatcgcataaaa 393
Query: 119 agatgattgaaaacaattcgttctccttgaacaacagaaagtatcgtaatgaaattttca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agatgattgaaaacaattcgttctccttgaacaacagaaagtatcgtaatgaaattttca 333
Query: 179 caatagattcgatgcccaatgtactgaatacatacggatatatcatggatatctttataa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caatagattcgatgcccaatgtactgaatacatacggatatatcatggatatctttataa 273
Query: 239 acagagtattaactgg 254
||||||||||||||||
Sbjct: 272 acagagtattaactgg 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space: 158916
Effective search space used: 158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no368_l05.g1 MSMg01no368_l05.g1 CHROMAT_FILE:
MSMg01no368_l05.g1 PHD_FILE: MSMg01no368_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:13 2005
(506 letters)
>mm_chr1_71678749_71679655
Length = 907
Score = 926 bits (479), Expect = 0.0
Identities = 500/507 (98%), Gaps = 1/507 (0%)
Strand = Plus / Plus
Query: 1 tttttctaataaatatgagagaaaccactccagtgtctcatagcttgccttcttctctgg 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttctaataaatacgagagaaaccactccagtgtctcatagcttgccttcttctctgg 260
Query: 61 ctttcaaagtaagacgtgggacaactgtgaaatttccttaacacgaagaatgtagctcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcaaagtaagacgtgggacaactgtgaaatttccttaacacgaagaatgtagctcag 320
Query: 121 aatacagacctcatgtgctaattacatgaaggctcttgtaagacaaattccgaatcatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatacagacctcatgtgctaattacatgaaggctcttgtaagacaaattccgaatcatgg 380
Query: 181 aggctttcgggacagaggactctgctcagaagcaatgatcccaaggccttatggcgtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aggctttcgggacagaggactctgctcagaagcaatgatcccaaggccttacggcgtgac 440
Query: 241 ataaaacaaacatttctaaatggggctgaatccggacaaacagacagaggtaataattaa 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaacaaacatttctaaatggggctgaatccggacaaacagacagaggtaataattaa 500
Query: 301 agcccaaggtttatttccccatcagtctaagccttctctcctttagtgtttttgtttgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcccaaggtttatttccccatcagtctaagccttctctcctttagtgtttttgtttgtt 560
Query: 361 tgttcgttttatatttacttaagtatactcttaaagccactgtgagcgaattgttcaaaa 420
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcgttttacatttacttaagtacactcttaaagccactgtgagcgaattgttcaaaa 620
Query: 421 aaaaa-tctttttaagcaatcatcaattgaaatgacatttgaaagcatatattttaaatt 479
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 aaaaaatctttttaagcaatcatcaattgaaatgacatttgaaagcatatatttaaaatt 680
Query: 480 cagtattttcagatcttgatatgactg 506
|||||||||||||||||||||||||||
Sbjct: 681 cagtattttcagatcttgatatgactg 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space: 444912
Effective search space used: 444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
