BAC Information

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BAC

Clone NameMSMg01-368O10
Chromosome1 (Build37)
Map Location 45,749,349 - 45,948,524
singlet/doubletdoublet
Overlap geneEG666819, Wdr75, EG433297, LOC383644
Upstream geneGulp1, LOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814
Downstream geneSlc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368O10.T7 (MSMg01no368_o10.b1)MSMg01-368O10.TJ (MSMg01no368_o10.g1)
ACCAG476017AG476018
length735731
length of high quality
(start - end)
598 (66 - 663)292 (113 - 404)
definitionCHROMAT_FILE: MSMg01no368_o10.b1 PHD_FILE: MSMg01no368_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:28 2005CHROMAT_FILE: MSMg01no368_o10.g1 PHD_FILE: MSMg01no368_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,948,077 - 45,948,524)(45,749,349 - 45,749,637)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACCCTTTCCAGATGTGACCAAATTTAGAAATGGTGTTGTTGCTGAT
GTCTGCAGTTAATATGAGGTCATCCTGGACCACAGTGGGCTTCTAATGCA
ATGCTACTGGCAATTTCATACTTGAAAAAACTGGACAGTTTGACAAAGAT
ATAGAAGGCTGATAAATGAAGATGAAGGCGGAGAATGGGATGATACAGCC
CCTGCCAAAGCACACTCCCAGAAAAACCTGACCATCTAAAAGAAAGTCTA
GAGGTGTATTTGCTTATGTGCTGATGCATCAGTCTTGGGTTTCCACCCAC
CAGAACTGAGAGACAATACATTTCTGTTCTGAAAGGTAACACAGGCTATG
CACAGCCACGCTCGCAAACAGCAGGTTGCCTGTGCCAGTCCCAGGTGGTG
CACATAAAAATCTTCCACCCACACTAAGGACAGAGTGGCATATCTCGTGC
TTTGAATGAATGTATCCACACAAGCTGTTTAAAACTGTCTCATGGTCCAA
ATCCACTTCATTTCTCAAACAAAACAACTCTTTGGCTACAGTACACTTTG
GGATACCATATGTGGAACAAATCTTTGCCACCATCCTGGACAGCTTACTC
TTCTAAGTAAATCTAATAATTATTTCTATTTGCAATGATCATCCAGTCAT
GCAAAGGAACCCTCAATAAGTTTTATAAAAATAAG
GTGAGAGGCCAGGCGGCCGCCTGGTCAAACAAGGGAGGNGAACTATAGAA
GTACCAGCGGAAGTCTCTTCAACTCCTCTTACTCTAGGTCTTCATTGACT
GTTTTATAAGGTGGGGAGACAGTGAAAGTCACCAGAAAGATAGCTAAGTT
AGAAACTTAGTCACCAGAGACTCCCAACTAAACAACAAAATGAAATATTG
ACCATATCATCAGAACTCATGTCTGCCTACTTAGGGCTAAGTTTAAGCCA
TATGCACCATAAAAGAAGTTATTCTCTCAAACACAGAGCCTATGTTACCT
GAGAATATTTTTGTTAATGCTTTGAACTATGCATCTACTCTGAGTGTCTC
TAAACATATATATTGGTCCTCAGCCTCCTTTGCTTCAAGTTATAGATTGG
ACGCCCCCACCCCCTATTATCTTTACTAGTGACTCTGTGATTATTCTGGA
TTATAATAAACTCATTCCATCATCTGCAGCAGGAACTGTGGCCTGTTTGT
TTGTTTTTTTCCATTTTTCACTAGGATTTAGATCACTTCCTATTTTCATA
ACACCTTATAGTATTTTCATTGTTTTAAAAGGACTTATATTCTACTAAAT
ACCAGAACCACTAAAAGGTCTCTTTCCAAGCTATTCCCCAGATTTTTCTG
ATTATTATACTACAGTACCAAATCCACCTGGACATATTTTTGGTTTGGAT
CCCTTGTTCCTGGCGTCCTGATATTACTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_o10.b1 MSMg01no368_o10.b1 CHROMAT_FILE:
MSMg01no368_o10.b1 PHD_FILE: MSMg01no368_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:28 2005
         (598 letters)



>mm_chr1_45947527_45948524
          Length = 998

 Score =  774 bits (400), Expect = 0.0
 Identities = 436/448 (97%)
 Strand = Plus / Minus

                                                                       
Query: 151 atgaagatgaaggcggagaatgggatgatacagcccctgccaaagcacactcccagaaaa 210
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 atgaagatgaaggcagagaatgggatgatacagcccctgccaaagcacactcccagaaaa 939

                                                                       
Query: 211 acctgaccatctaaaagaaagtctagaggtgtatttgcttatgtgctgatgcatcagtct 270
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 acctgaccatctaaaaggaagtctagaggtgtatttgcttatgtgctgatgcatcagtct 879

                                                                       
Query: 271 tgggtttccacccaccagaactgagagacaatacatttctgttctgaaaggtaacacagg 330
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 878 tgggtttccacccaccagaactgagagacaatacatttctgttcagaaaggtaacacagg 819

                                                                       
Query: 331 ctatgcacagccacgctcgcaaacagcaggttgcctgtgccagtcccaggtggtgcacat 390
           ||||||||||| | | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ctatgcacagcaatgtttggaaacagcaggttgcctgtgccagtcccaggtggtgcacat 759

                                                                       
Query: 391 aaaaatcttccacccacactaaggacagagtggcatatctcgtgctttgaatgaatgtat 450
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 758 aaaaatcttccacccacactaaggacagagtggcatagcttgtgctttgaatgaatgtat 699

                                                                       
Query: 451 ccacacaagctgtttaaaactgtctcatggtccaaatccacttcatttctcaaacaaaac 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ccacacaagctgtttaaaactgtctcatggtccaaatccacttcatttctcaaacaaaac 639

                                                                       
Query: 511 aactctttggctacagtacactttgggataccatatgtggaacaaatctttgccaccatc 570
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aactctttggctagagtacactttgggataccatatgtggaacaaatctttgccaccatc 579

                                       
Query: 571 ctggacagcttactcttctaagtaaatc 598
           |||||||||||||| |||||||||||||
Sbjct: 578 ctggacagcttacttttctaagtaaatc 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no368_o10.g1 MSMg01no368_o10.g1 CHROMAT_FILE:
MSMg01no368_o10.g1 PHD_FILE: MSMg01no368_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:28 2005
         (292 letters)



>mm_chr1_45749149_45749840
          Length = 692

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggggagacagtgaaagtcaccagaaagatagctaagttagaaacttagtcaccagagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggggagacagtgaaagtcaccagaaagatagctaagttagaaacttagtcaccagagact 260

                                                                       
Query: 61  cccaactaaacaacaaaatgaaatattgaccatatcatcagaactcatgtctgcctactt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 cccaactaaacaacaaaatgaaatattgaccatatcatcagaagtcatgtctgcctactt 320

                                                                       
Query: 121 agggctaagtttaagccatatgcaccataaaagaagttattctctcaaacacagagccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggctaagtttaagccatatgcaccataaaagaagttattctctcaaacacagagccta 380

                                                                       
Query: 181 tgttacctgagaatatttttgttaatgctttgaactatgcatctactctgagtgtctcta 240
           |||||||||||||||||| ||  |||||||||||||||||||||||  ||||||||||||
Sbjct: 381 tgttacctgagaatatttctggcaatgctttgaactatgcatctacagtgagtgtctcta 440

                                                            
Query: 241 aacatatatattggtcctcagcctcctttgcttcaagttatagattgga 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacatatatattggtcctcagcctcctttgcttcaagttatagattgga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)