Query= MSMg01no369_g08.b1 MSMg01no369_g08.b1 CHROMAT_FILE:
MSMg01no369_g08.b1 PHD_FILE: MSMg01no369_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:06 2005
(318 letters)
>mm_chr1_37399008_37399725
Length = 718
Score = 511 bits (264), Expect = e-149
Identities = 302/320 (94%), Gaps = 13/320 (4%)
Strand = Plus / Plus
Query: 5 gaattcaaaactctttcca---tttatagcttaaaaggcaaatggttggaggctttctta 61
||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaaactc----caggatttatagcttaaaaggcaaatggttggaggctttctta 261
Query: 62 tgacttactaattaatccctgccctgcccatgtagggtgcagaggctataaccccacaga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgacttactaattaatccctgccctgcccatgtagggtgcagaggctataaccccacaga 321
Query: 122 cttaatgtcagaaactctttttttttttaaagttaataagccttattttaaagcagtttt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttaatgtcagaaactctttttttttttaaagttaataagccttattttaaagcagtttt 381
Query: 182 gggtcatacgagaattgattggagagtaaagctcccttgacccactccacgcatagctgt 241
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggtcatacgagagttgattggagagtaaagctcccttgacccactccacgcatagctgt 441
Query: 242 ctgctcgtgctgcttgaggaggaggctgcggcg-a--atttttgtgcttctccgatctgc 298
||| |||||||||| |||||||||||||||||| | | | |||||||||||||||||
Sbjct: 442 ctggtcgtgctgctcgaggaggaggctgcggcggagcagt---gtgcttctccgatctgc 498
Query: 299 tgatggccttctgagttcag 318
||||||||||||| ||||||
Sbjct: 499 tgatggccttctgtgttcag 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_g08.g1 MSMg01no369_g08.g1 CHROMAT_FILE:
MSMg01no369_g08.g1 PHD_FILE: MSMg01no369_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:07 2005
(243 letters)
>mm_chr1_37528452_37529094
Length = 643
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%)
Strand = Plus / Minus
Query: 1 actattggaactgtcgcaacttttgccaggggggtggcagtggaaaagcccgcccctgat 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actattggaactgtcacaacttttgccaggggggtggcagtggaaaagcccgcccctgat 384
Query: 61 tcctctgtccctggagtttttgtggcttggaaatagctctctcttctggtcattctaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 tcctctgtccctggagtttttgtggcttggaaatagctctctcttctggccattctaggt 324
Query: 121 gttgcttagcagggatgaacactatttggactggcatgggagatctggtgacagtgtgga 180
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 323 gttgcttagcagggatgaacactatttggactggcatgagagatctggtaacagtgtgga 264
Query: 181 caaagttgctagagtctctgcttgagtgccttgcaagttggtcctgtggcaacttctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaagttgctagagtctctgcttgagtgccttgcaagttggtcctgtggcaacttctggc 204
Query: 241 cca 243
|||
Sbjct: 203 cca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
