Query= MSMg01no369_k10.b1 MSMg01no369_k10.b1 CHROMAT_FILE:
MSMg01no369_k10.b1 PHD_FILE: MSMg01no369_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:26 2005
(452 letters)
>mm_chr1_73129464_73130323
Length = 860
Score = 812 bits (420), Expect = 0.0
Identities = 447/460 (97%), Gaps = 8/460 (1%)
Strand = Plus / Plus
Query: 1 tctcacagttgagcctgggcaaaatgtataccccagcttctatgcatacagaataaagaa 60
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 201 tctcacagttgagcctgggcaaaatttaaaccccagcttctatgcatacagaataaagaa 260
Query: 61 tatatgatgcagagagagtgggaacacacatgaagtctaccaaca---tgtttttcgtaa 117
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 261 tatatgatgcagagagagtgggaacacacatgaagtctaccaacatgttgttttttgtaa 320
Query: 118 caacgtgagtcaaagaaacaacccaaatctatgcccaaaagaatgaataaatacatggca 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacgtgagtcaaagaaacaacccaaatctatgcccaaaagaatgaataaatacatggca 380
Query: 178 taaacattgctctgtccatcacggaagagtacgtatccatacacatttcagtgtggctca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaacattgctctgtccatcacggaagagtacgtatccatacacatttcagtgtggctca 440
Query: 238 acctcaaatgtgtgatgttgggcaaatgcagcagatcatagactaaatacaccaggactc 297
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 acctcaaatgtgtgatgttgggcaaatgcagaagatcatagactaaatacaccaggactc 500
Query: 298 cgtttatgtaaacttcaaaagaagcaaaatgaaacaatggattgtttgaagacacatgca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgtttatgtaaacttcaaaagaagcaaaatgaaacaatggattgtttgaagacacatgca 560
Query: 358 tgtgtggcaaaattacaaaggaaaacaaaaaaatctaaaccaaaaaaaaaaaa-----ga 412
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 561 tgtgtggcaaaattacaaaggaaaacaaaaaaatcaaaaccaaaaaaaaaaaaaaaaaga 620
Query: 413 tgaaaatgaaattggtcatagcggtttctttgaaacgggg 452
||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaaatgaaattggtcatagcggtttctttgaaacgggg 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 860
Length adjustment: 10
Effective length of query: 442
Effective length of database: 850
Effective search space: 375700
Effective search space used: 375700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_k10.g1 MSMg01no369_k10.g1 CHROMAT_FILE:
MSMg01no369_k10.g1 PHD_FILE: MSMg01no369_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:26 2005
(311 letters)
>mm_chr1_73292316_73293026
Length = 711
Score = 592 bits (306), Expect = e-173
Identities = 309/310 (99%)
Strand = Plus / Minus
Query: 1 ttggtctactttggcatccccttaggaggagcttccattaggtcctgaatgtttggtgag 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 510 ttggtctactttggcatccccttaggaggagcttccattaggtcctgaacgtttggtgag 451
Query: 61 ccaagacctcacaagtcttccttcaatagaaagatccaaactgttgggtctcaactcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ccaagacctcacaagtcttccttcaatagaaagatccaaactgttgggtctcaactcaaa 391
Query: 121 tgccttcagaaaccaggtagacattattagtgtgagatgtagacagggtggcttgttgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgccttcagaaaccaggtagacattattagtgtgagatgtagacagggtggcttgttgct 331
Query: 181 ggagagaagagccatcaggagaaagccacaatcaaattaaccaaaaagcaaacactggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggagagaagagccatcaggagaaagccacaatcaaattaaccaaaaagcaaacactggta 271
Query: 241 gaaacaaggatttcagattctgaactggcctggtctggggtgatatatggaggttgggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaaacaaggatttcagattctgaactggcctggtctggggtgatatatggaggttgggag 211
Query: 301 tggaggggtg 310
||||||||||
Sbjct: 210 tggaggggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
