BAC Information

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BAC

Clone NameMSMg01-369M08
Chromosome1 (Build37)
Map Location 40,330,069 - 40,330,312
singlet/doubletsinglet
Overlap geneIl1r1
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
Downstream geneIl1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-369M08.T7 (MSMg01no369_m08.b1)MSMg01-369M08.TJ (MSMg01no369_m08.g1)
ACCAG476676AG476677
length789809
length of high quality
(start - end)
122 (64 - 185)262 (56 - 317)
definitionCHROMAT_FILE: MSMg01no369_m08.b1 PHD_FILE: MSMg01no369_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:35 2005CHROMAT_FILE: MSMg01no369_m08.g1 PHD_FILE: MSMg01no369_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
TGATTCTTGTAAGAATTGATTATCATTATTATTGTATGTGATGTGGTAGC
ACATATGTGGTAATCAAAGGATAACTTGCATGGAATCAATTTACTTCCTG
TACCTTTACCTAAGGACTGGGAATTGAACTCAGGCTTCGAGGCTTGCACA
AATATCTTTACCTTCTGAGTCGTTTTGCTGGCCCCTCTATCTTGGATTCT
TCCTCTTCAACCCTTTGGAAAAGTTTTCCCTTATCTTTTTTTTTTCAGTT
TTCCACCTTTTTTTTTGAGCAGCCAACCAGATTTATTTCCAGCTTCCCAT
ATGATATTATTTATGACCTTTTTCATTTTTACTACGTTCCCTGCACATTC
CTTGCCTCCCTTTAGTTTCTTTTTTCTTTTTTGAATTTTTAGCTTCATCC
CCTCGCTTGTTTTTTTGATTACCTGCAATTTTATATATAGACTCCTTATT
GGTTCCCTTGTGCCTTTTATTGTCTTATATTTCCTTTCTCCCTATTTCTT
TCTTTTTTTTTTCTTTTTTTTCTTTTTTTTTTGTACCTCCTCTTTTTCTT
CTCCTCTTCACCTCTCCTTTTCTCTCCTATATTTTTTTTCTCCTCTTTTC
TACCCCCTTTCCTTTCTTTCTTTTTTTTCCACCATTTCTCCTCTATATTT
ATCTTATATTTCCCCATCTACCTTCTCTACTCCTACTCCTTCTGCTCCCT
CCGCTACCTCTCTCTATTCTTCTTTTCTTTCCCCTCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCAA
AAATTCCCCCAAGTCCATGATTTGTACAGGTCCACTTTGCAGCTCACCAG
AATGTCCCCTGTCAGAAAACAAGTCTATAAGACCTAAAGGATAGGCCCAC
TAGAGATTGGACTGCCGGCACTTGCCTCTTGATTATGCTTCAGGGTCTTG
GGTACCCAGTAATTCTTTACCCAACTCCCCAGATTCCCATTCAATGGCTG
CCAAAGACTGTCTTGGGTGCCTTGGGGGACTTCACTCTAATATGTCTGCT
TTTTTTTTCTGTCAGGGTTGTATAGAGGGGAATGTAGCTATATTTATGCA
TTATGGTGTCAGCTGGAGATACTCTAACATCCCCTTATATTGTGCAACAC
ATCTGTTTTGATTACATGTTTTTTCCTTACCTCTGTTTCTTACTGCTTGT
GCCCTGCTCTATTTCTTTATCTTTTCTCTTTTTTCTCGCTCTTGCCTGTC
CTTCGTCCTTTTGCCCCTTCTTCCTTTTCTCTTTTTCTTTCTTCTTTCCC
TATCTCTTTCTTTTTTTTCCTACTCTCCCTTCGTCTCTTTCCCCCACCTT
CTCTCTTCTCTCTCCTTCTTCTTCCCTTCCCTTTTTTCTTATTCTTTTTT
TTTCCCCATTTTTATTCTTTTCACACCTCTATTTCTGTTTTTTTTTTCTC
TCCCCCCCTTCTTTTATTCTTTCTTCTTTTTCTTCTTACTCCCCTTTTTT
TCTCCTCTCTTTCTCTTCTTTTTCTTTCTCTCCTCCCTTCCTCTATTTTT
TCCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no369_m08.g1 MSMg01no369_m08.g1 CHROMAT_FILE:
MSMg01no369_m08.g1 PHD_FILE: MSMg01no369_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:35 2005
         (262 letters)



>mm_chr1_40329869_40330530
          Length = 662

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccccaagtccatgatttgtacaggtccactttgcagctcaccagaatgtcccctgtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccccaagtccatgatttgtacaggtccactttgcagctcaccagaatgtcccctgtcag 260

                                                                       
Query: 61  aaaacaagtctataagacctaaaggataggcccactagagattggactgccggcacttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacaagtctataagacctaaaggataggcccactagagattggactgccggcacttgc 320

                                                                       
Query: 121 ctcttgattatgcttcagggtcttgggtacccagtaattctttacccaactccccagatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ctcttgattatgcttcagggtcttgggtacccagtaattctttacccaactccccagact 380

                                                                       
Query: 181 cccattcaatggctgccaaagactgtcttgggtgccttgggggacttcactctaatatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccattcaatggctgccaaagactgtcttgggtgccttgggggacttcactctaatatgt 440

               
Query: 241 ctgc 244
           ||||
Sbjct: 441 ctgc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)