BAC Information

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BAC

Clone NameMSMg01-370C15
Chromosome1 (Build37)
Map Location 11,192,320 - 11,192,609
singlet/doubletsinglet
Overlap genenone
Upstream geneArfgef1, Cpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik, LOC665262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370C15.T7 (MSMg01no370_c15.b1)MSMg01-370C15.TJ (MSMg01no370_c15.g1)
ACCAG476976AG476977
length777774
length of high quality
(start - end)		527 (37 - 563)290 (69 - 358)
definitionCHROMAT_FILE: MSMg01no370_c15.b1 PHD_FILE: MSMg01no370_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:07 2005CHROMAT_FILE: MSMg01no370_c15.g1 PHD_FILE: MSMg01no370_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGA
CTTGATTCAAATAATTTTGGAAAGGTTTAAGAAGATGGTTTTAGTTGTAT
TGAAAGAAAGATAAAATAAACTTAGCAAAAAAAATAGAATGTGCCCAATC
TTCAAAGAGTAGAAAGTAAAGGCTGTATAATAAAGAGTACAATGAGCTCT
CACAGTTACACCAAGAAGAGAAATAGGCTTGGGATAGAATTGCGACCAAG
AAAAAAAATTATTCATTCTAGGTCAGGTCCAAGGATGAAGATCCAGGTGA
GCACTATGACAAAGTAAGGACACGTGAAACTGTTGCTTTGAACTTGTAGT
GAGCTTACAGAATGAAACACTGCTTTGAACTTACTGTTGGGATCCTTCTG
TAACTCCCCTTTTGTACAACATTTTATCTCTGAAATAATTTTATAAGAAC
TTTTGTCTAAGAAGGTATAAAAGGTCTGAGAGACAATTAATTGTGGCTCA
GTCTATCTATCAGATATAAATGTGTATATATATCTGTGTATATATGTCTG
TCTGTATCTCTGTCTATAAANATGTACAATATACATATATCTATATATGG
CCATTTGTCCATATGTATATGCCTACCTATATATTTCCGTAATAGTGTTT
AAACACGCCTTTATCCTTGCGAAATAAATGCAATCCGTGGTTGGTCCTTG
CCTAACATATGCAATTTAAGGGTCGCCCTATTTATTCCCCCCTGCTTCCT
TCTTCTTCCTTTTTTTCCTCTCCGTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATACTCTGTGAGTTATCTCAATGGAACTGTG
CTTTTTAAAAACCTTTACACTTATTTCAACCAGATATTTTCAATCAGAGT
TTACTTGGAAAAAATTCAACCAGACCTTTGTATTAAGAACATAAAGCTCT
GAAAATGTACATGCCAATAACTTTGTACAGACTAAAAAGTTTATAGTTAG
GAATATATGTATGTACATGCATATGCACATATGTGGAAAAAAGAGATTAG
TAATTTGGAGGAGTTTTAGTAATTGGAAAGTTTTGAATGAGGAAAGGNAA
GGGAGAAANGNTGTAATTAAATTATAAGNTAAATAAATATGGATANGTAT
AAATTTACCATANATATGTATATAAATAGATATGTTTTTAAATATTTGAA
AAATTTAGGTTATTTTGGANAATGGTTTTTTGGGATAGGGTTTTCTGGAA
GTTTTTTTAATGNTTTGTTTTAATTGGGTTTGTTTATGGATTTATATATT
TGGATTATTTTTGTTTTGGGGAGATTTTTTGTATATTTTTGGTTATTTTG
TTATTTGAGGTTTTATTTAGAATTGAGTTATTTTTGTTAGTGTTTTTTGT
ATAGGATTTGGTTTTTTTATGTAGTTTTTGATGTTTATTTATTGTTTCGG
TTGATTTATTTATTATTTAATTATTGTGGAAGTGANGTATTAAATTTTAT
TGTTGGAATTAGTTTTGATTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_c15.g1 MSMg01no370_c15.g1 CHROMAT_FILE:
MSMg01no370_c15.g1 PHD_FILE: MSMg01no370_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:07 2005
         (290 letters)



>mm_chr1_11192120_11192809
          Length = 690

 Score =  547 bits (283), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catactctgtgagttatctcaatggaactgtgctttttaaaaacctttacacttatttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactctgtgagttatctcaatggaactgtgctttttaaaaacctttacacttatttca 260

                                                                       
Query: 61  accagatattttcaatcagagtttacttggaaaaaattcaaccagacctttgtattaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagatattttcaatcagagtttacttggaaaaaattcaaccagacctttgtattaaga 320

                                                                       
Query: 121 acataaagctctgaaaatgtacatgccaataactttgtacagactaaaaagtttatagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 acataaagctctgaaaatgtacatgccaataactttgtacagactaaaaagtttatattt 380

                                                                       
Query: 181 aggaatatatgtatgtacatgcatatgcacatatgtggaaaaaagagattagtaatttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaatatatgtatgtacatgcatatgcacatatgtggaaaaaagagattagtaatttgg 440

                                                             
Query: 241 aggagttttagtaattggaaagttttgaatgaggaaaggnaagggagaaa 290
           ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 aggagttttagtaattggaaagttttgaatgaggaaaggtaagggagaaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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