BAC Information

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BAC

Clone NameMSMg01-370H11
Chromosome1 (Build37)
Map Location 92,856,660 - 93,043,067
singlet/doubletdoublet
Overlap geneRab17, Lrrfip1, Gm817
Upstream geneAsb18, Iqca, Cxcr7, Cops8, Col6a3, Mlph, Prlh
Downstream geneLOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370H11.T7 (MSMg01no370_h11.b1)MSMg01-370H11.TJ (MSMg01no370_h11.g1)
ACCAG477208AG477209
length742785
length of high quality
(start - end)		504 (46 - 549)358 (74 - 431)
definitionCHROMAT_FILE: MSMg01no370_h11.b1 PHD_FILE: MSMg01no370_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:32 2005CHROMAT_FILE: MSMg01no370_h11.g1 PHD_FILE: MSMg01no370_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,042,568 - 93,043,067)(92,856,660 - 92,857,017)
sequence
CTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGTCAGTCAGAGCAACATCCCAAGACCCTGTCTACCCAAAATA
AACAACAAAACCAAAACAATAAAAGATATTACTTCCTTAAGATTTGGAAA
TGAAGCATCACATTCATAAAAGTCCCTGGGTGAAATAAATCACCATGGAA
ATCAGAAAACATTTTGAAATTTAGTATGTAGTATGCAGCTAAAATAGCAC
TCGTTTACAGCTTTAGGGGTTGGGCACTCTAAGTCAGTGGTAGACTGAGC
ACTTGTCTAACACATCTCATGCAGCAAATCTGGGTTCAAGAACCAGCACA
CACCATCAATAGAAAATAGTATTGAATCCTTTCACTACAAAAGATTTACC
AGAAATGCCTGAAGGTTCTGAAGAAAGAAGTAACCAGGCATGTGCTGGAG
AGATGGCCCAGTGGTTAGGTGCACTTATTGCTCTATGAGGGTGCAAGTGG
GATTCCCAGCACCCACAGTGGGTGACTCAGAACCAAAGTCCAGCTCAGGA
CTGATGGCCTCTTCTGTTCTCTGCGGGCAATCGTGCATGCAAACAAGACA
AAAGTTGTTTCCTTAAAACAAATGGAATTGATACTCTTTTAAAAGACTTG
GCCTGAGAAAACATAAACCAAACCCTTACCTAATTTGGCAATTATTAAGC
CGATATAAAAGGATTAATCATCTTTTCTCTAACAAAAACTGA

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTCCAGGTCCTCCAGCCACTGCTG
GGCCTTGTGAAAGGAATCCTAAAGAGACAGAATGGAAACCGTGCTGGAGT
TCTCCTTGCTGAACCAGAAGAGCAAGGCTCCCTTGTGGTTGCATAGCCAC
ATCAAGACCTTGTTCCAGAAAGCAATGCCAAAGGGCTGCTCTGATCCCCT
GAGAGGGCATCCAGGATGGGCTGGCCCTGCTAAGGGAGAGCTGTGCAGCC
AGGCAGCACACCAGAAAGCCAAGGGCATGGATGTCACAGGGAATTTGGAG
TCAAGAGCTCCACTTTGGACACCATTTTGTGCAGGAGAGTTTGAGAGAAC
TGTTATCTCCCCAAACCCAGTTCCTAACTGTAGCCCCTCATAGGTCAGGT
GAGGGGCTTGACCCTGTGCCCTTTTGGCACTTGTCCTCCTGAACCCTGGA
ATCAAGGTTGATATGGTGGTTCTATCCTCCACAACCTTGACCCAGGACCA
ACACATAATTTTTTGTACCTCCGGCCCTTTTTTTTTATGCACTCTTCCCC
AATCTCCCCGTCCCAAATACACTCTCGGTTTCCCAATCATATAGAATAAT
CTCCCTCTCCCCACTGCTCCTTGTTGTAATCGATTGTATTTCTCTCTTTT
CCCCGCTATTCATTTTTATCCTCACACCTTCTCATCTTTATCATCTCCAC
ATCTTATTTTTTTTTCTCCTATAATACCTCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_h11.b1 MSMg01no370_h11.b1 CHROMAT_FILE:
MSMg01no370_h11.b1 PHD_FILE: MSMg01no370_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:32 2005
         (504 letters)



>mm_chr1_93042417_93043320
          Length = 904

 Score =  859 bits (444), Expect = 0.0
 Identities = 486/500 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggtcagtcagagcaacatcccaagaccctgtctacccaaaataaacaacaaa 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 651 gaattccaggtcagtcagagcaacatcctaagaccctgtctacccaaaataaacaacaaa 592

                                                                       
Query: 65  accaaaacaataaaagatattacttccttaagatttggaaatgaagcatcacattcataa 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 accaaaacaataaaagatgttacttccttaagatttggaaatgaagcatcacattcataa 532

                                                                       
Query: 125 aagtccctgggtgaaataaatcaccatggaaatcagaaaacattttgaaatttagtatgt 184
           ||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 531 aagtctctgggtgaaataaatcacaatggaaatcataaaacattttgaaatttagtatgt 472

                                                                       
Query: 185 agtatgcagctaaaatagcactcgtttacagctttaggggttgggcactctaagtcagtg 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 471 agtatgcagctaaaatagcactcatttacagctttaggggttgggcactctaagtcagtg 412

                                                                       
Query: 245 gtagactgagcacttgtctaacacatctcatgcagcaaatctgggttcaagaaccagcac 304
           ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 411 gtagactgaccacttgcctaacacatctcatgcagcaaacctgggttcaagaaccagcac 352

                                                                       
Query: 305 acaccatcaatagaaaatagtattgaatcctttcactacaaaagatttaccagaaatgcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 acaccatcaatagaaaatagtattgaatcctttcactacaaaagatttaccagaaatgcc 292

                                                                       
Query: 365 tgaaggttctgaagaaagaagtaaccaggcatgtgctggagagatggcccagtggttagg 424
           ||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 291 tgaaggttctgaagaaacaagaaaccaggcatgtgctggagagacggcccagtggttagg 232

                                                                       
Query: 425 tgcacttattgctctatgagggtgcaagtgggattcccagcacccacagtgggtgactca 484
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cgcacttattgctctatgacggtgcaagtgggattcccagcacccacagtgggtgactca 172

                               
Query: 485 gaaccaaagtccagctcagg 504
           ||||||||||||||||||||
Sbjct: 171 gaaccaaagtccagctcagg 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no370_h11.g1 MSMg01no370_h11.g1 CHROMAT_FILE:
MSMg01no370_h11.g1 PHD_FILE: MSMg01no370_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:32 2005
         (358 letters)



>mm_chr1_92856460_92857217
          Length = 758

 Score =  661 bits (342), Expect = 0.0
 Identities = 354/358 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctccaggtcctccagccactgctgggccttgtgaaaggaatcctaaagagacagaat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctccaggtcttccagccactgctgggccttgtgaaaggaatcctaaagagacagaat 260

                                                                       
Query: 61  ggaaaccgtgctggagttctccttgctgaaccagaagagcaaggctcccttgtggttgca 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ggaaaccgtgctggagttctccttgctgaaccagaagagcaaagctcccttgtggttgca 320

                                                                       
Query: 121 tagccacatcaagaccttgttccagaaagcaatgccaaagggctgctctgatcccctgag 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tagccacatcaagaccttgttccagaatgcaatgccaaagggctgctctgatcccctgag 380

                                                                       
Query: 181 agggcatccaggatgggctggccctgctaagggagagctgtgcagccaggcagcacacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggcatccaggatgggctggccctgctaagggagagctgtgcagccaggcagcacacca 440

                                                                       
Query: 241 gaaagccaagggcatggatgtcacagggaatttggagtcaagagctccactttggacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagccaagggcatggatgtcacagggaatttggagtcaagagctccactttggacacc 500

                                                                     
Query: 301 attttgtgcaggagagtttgagagaactgttatctccccaaacccagttcctaactgt 358
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttgtgaaggagagtttgagagaactgttatctccccaaacccagttcctaactgt 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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