AACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTTAGTGAGCATTTGAGACCCAGTATTAACTGAAGGCTTTCTTAGC
GGACACCACTAAAATTTTCTAAATTTTCAACTTGAGGCAAGTTTAAAGTT
AATAAATCTTAAATTTTAGAATATGCATTCCAACTATTAAGTTTTTAGAC
AGAAAGAAAGTCTAGGGTCAACTTTTCTGAAAACTCTTGTTGACACTTGC
TGTGGCATAGTTTACTAACATTTTCTAAACTTTTAGCTTCTAACCTTAAT
GTTAGTAAATTTTAAAATTCAAGTGCATTTCAAATATAACCAAAGGAAGT
TTGAGATCAGTTTCTCTGAAAAACTCATGTTGACACTGTCTATAGCATAT
GCCTCTTGCGCTCTGTATTGACATTTTTCAAATGAAAGGTTAGTGGAGAA
GAAAAGCCAGCTCTAAAAACTGAATGGCGGTCTCTGGGATTGTGGCTGTA
GAGATCCCAAAGAGAAGGCTTACCCATCAGCTTATTCCTAAGAAAAGGGG
AAAACCACCACTCTTAAATGATCCTTACTCAACATCATTGTCAAGGAATC
CTACGCATTTACCCTCTGCCCTAAGGGAAAACCTCTTTCTTCTATGTGTG
GGCGAAAAATGCCCTCGAATGCGACCACGCATATCTGTGCCTTTTCTTCC
TACCGCCCCCATTGGGCGTCTCCCTCCATTCCCCCCCCCGTTTG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTGCCCCAGTTTTAAT
TGGGTTATTTGGTTTTAGGGAGTCCACCTTCTTCAGTTCTTTATATATAT
TGCATATTAGTCCCCTATATTATTTAGGATTGGTAAGATCTTTTCCCCAT
CTATTGGTGGCGTTTTTGAAAATAAGAACTGATAGTGGGTCTTTTGCCTT
GCAGAAGCTTTGCAATTTTATGAGGACCCATTTGTCAATTCTCGATCTTA
GAGCAGAAGCTATTTGGTGCTCTATTTCAGGAATTTTCCCCCCCCCCNNT
TTCCCCTCTTTTTTTTCCTACACTCTTTCTCTTTTTTTTTCCCCCTCCCC
TCCCCCTCTCCTCCAATTTCCGTTTTTTTTCTTTTTTCCCCCCCTTTCCC
TTATTTCCCCCTCCTTCTTTTTTTCTGCTTTTTTTTCCCCCGCCTCTCTT
TTTTCTCTTTCCTTCTTCTCGCGCTCTTTCTCTTCTTCTTTTCCCTTAGT
CTTCCTTCCGCTTCTTTTTCCCGCCTTCTTTGTTTCTTCTTTTTCTCTTT
TCTTTTTTTCCCTCCCTCTCGTTCTCGCCTTCTCTTCTTCTTCTGTTCGC
GTTTTTCTGTCCGCTTTCCCGCTTTATTTCCCCCTTTTTCCCCCTTTGCT
ATATTTTCTCCCGTTTCCCCCTATCCTATTTCTTTCGCTTCCCGCTCCTC
CCCTTCTTGCTTTTTTCCGATCCCTCCTCTTCTCCCTTTTTG

Query= MSMg01no370_i03.b1 MSMg01no370_i03.b1 CHROMAT_FILE:
MSMg01no370_i03.b1 PHD_FILE: MSMg01no370_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:35 2005
         (539 letters)



>mm_chr1_53557033_53557970
          Length = 938

 Score =  934 bits (483), Expect = 0.0
 Identities = 522/535 (97%), Gaps = 1/535 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttagtgagcatttgagacccagtattaactgaaggctttcttagcggacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactttagtgagcatttgagacccagtattaactgaaggctttcttagcggacac 264

                                                                       
Query: 65  cactaaaattttctaaattttcaacttgaggcaagtttaaagttaataaatcttaaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactaaaattttctaaattttcaacttgaggcaagtttaaagttaataaatcttaaattt 324

                                                                       
Query: 125 tagaatatgcattccaactattaagtttttagacagaaagaaagtctagggtcaactttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagaatatgcattccaactattaagtttttagacagaaagaaagtctagggtcaactttt 384

                                                                       
Query: 185 ctgaaaactcttgttgacacttgctgtggcatagtttactaacattttctaaacttttag 244
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttaaaactcatgttgacacttgctgtggcatagtttactaacattttctaaacttttag 444

                                                                       
Query: 245 cttctaaccttaatgttagtaaattttaaaattcaagtgcatttcaaatataaccaaagg 304
           ||||| | |||||||||||||| ||||||| ||||| |||| ||| | | ||||||||||
Sbjct: 445 cttctgatcttaatgttagtaagttttaaa-ttcaaatgcacttcgagtgtaaccaaagg 503

                                                                       
Query: 305 aagtttgagatcagtttctctgaaaaactcatgttgacactgtctatagcatatgcctct 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 aagtttgagatcagtttctctgaaaaactcatgttgacactggctatagcatatgcctct 563

                                                                       
Query: 365 tgcgctctgtattgacatttttcaaatgaaaggttagtggagaagaaaagccagctctaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcgctctgtattgacatttttcaaatgaaaggttagtggagaagaaaagccagctctaa 623

                                                                       
Query: 425 aaactgaatggcggtctctgggattgtggctgtagagatcccaaagagaaggcttaccca 484
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaactgaatggcggtctctgagattgtggctgtagagatcccaaagagaaggcttaccca 683

                                                                  
Query: 485 tcagcttattcctaagaaaaggggaaaaccaccactcttaaatgatccttactca 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcagcttattcctaagaaaaggggaaaaccaccactcttaaatgatccttactca 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space:   490912
Effective search space used:   490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)