BAC Information

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BAC

Clone NameMSMg01-370N02
Chromosome1 (Build37)
Map Location 85,260,747 - 85,261,074
singlet/doubletsinglet
Overlap geneC130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370N02.T7 (MSMg01no370_n02.b1)MSMg01-370N02.TJ (MSMg01no370_n02.g1)
ACCAG477473AG477474
length762761
length of high quality
(start - end)
344 (35 - 378)302 (73 - 374)
definitionCHROMAT_FILE: MSMg01no370_n02.b1 PHD_FILE: MSMg01no370_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:59 2005CHROMAT_FILE: MSMg01no370_n02.g1 PHD_FILE: MSMg01no370_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAGGATCCGCGGAAT
TCCTTTACCTATTTTTTTGTTGTCTCGTTTTGTTTTTCTTTTTTGCAGTA
CTGGGGATCAATTCTGGGGATTCTCTTGAGAATGATTTTTGGAGAAACTT
TCATATCTTGTCTCTGTTTTTTCTAAACAGTGTGTGAGCATGTTCGCTGC
TTATTACTTCGTGGCATTTGTAGTTTAGTTTTGACACCTTGGCACTTTTG
TATTTCTGACTAATTTGCTGCATTTTCTAGTTGGATCAGTGCATCACATG
TGAAACCGCAGTATTTGAATTTACCGTCTGTGAAATAATTTAGTTCCAAC
TCAGATTTTATGGGGAGTTCATTTACGATTCCACATGAAACCAGGGTGTA
GTGGTGTGTGTTTTTAACTCCTGAATTTGGGACACTTCACTCGTTGTATT
CCCTTACACCACTGGCTACCTACCTCTGTTTGAACTATTGATATCCTCTT
TGATTGAGATACTCCATTCTAAATCCTTTCGTGCCGATCACTTGGCCCCT
CTTCGCCCTCTTTTATGCCTCCTATTATATCTTCCTTTTCCACATACATC
TCTATGTCCCCCCTTCTTAGCTTTATAACTCTTTTTTCTGCAATATTTTC
CATCCTTTTACTCTCCTTCCTTTCCTTTAGCTTTCTTACCCTTCCTACAT
ATCTCTCCTCTTTTTTTTCTTTGCTCCTTCCCCCATATTTTTCCGATCTT
TTATCCCTTTTN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAA
TGGGTGTTGGATCTTATCAAATGCATTTTCTGCATCTAACGAGATGATCA
TGTGGTTTTTGTCTTTGAGATTGTTTATATAGTGTATTACATTGATGGAT
TTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTC
AGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTT
TATTGAGGATTTTTGCATCGATATTCCTAAGAGAAATTGGTCTGAAGTTC
TCTATCTTTGTTGGATCTTTCTGCGGTTTAGGTATCACATTAATATTGTC
TTCTTATAATGAATTGTTTATAGCATTTTCCACTTCTCCCTTGCATCCCA
TTTTCGCCCTTACCTGCAATTCTCTCTTTTTTTCCCCCCCGTCTTATTTC
CTTCTTAAACCCTTTCTCTCCTTTTTCTATTTTTTTTTTTTTCTATTATT
TTTTTCTCCCTTTTCACCCCCTTTTCTTTACTTTCTCTCTTTTTTTTCTT
CCCTCTCCCCTTTTTTTTCCTTTCCCCTTTCCTCCGTCTCTTTTTCTTTT
TCCATTTTTCCCTTTTTACCTTTTCCTTTCCTCTTTTTCCCCCTTCTTTT
CCCTTTTTCTCTCCTCGTTTTCCCTCCCCTTTATCTATTTTTATATCTTT
CTCTCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_n02.b1 MSMg01no370_n02.b1 CHROMAT_FILE:
MSMg01no370_n02.b1 PHD_FILE: MSMg01no370_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:59 2005
         (344 letters)



>mm_chr1_85260535_85261278
          Length = 744

 Score =  588 bits (304), Expect = e-172
 Identities = 322/328 (98%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattcctttacctatttttttgttgtctcgttttgtttttcttttttgcagtactgggg 72
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 540 gaattcctttacctatttttttgttgtctcattttgtttttcttttttgcagtactgggg 481

                                                                       
Query: 73  atcaattctggggattctcttgagaatgatttttggagaaactttcatatcttgtctctg 132
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 480 atcaattctggggattctcttgagaatgacttttggagaaactttcatatcttgtctctg 421

                                                                       
Query: 133 ttttttctaaacagtgtgtgagcatgttcgctgcttattacttcgtggcatttgtagttt 192
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 420 ttttttctaaacagtgtgtgagcatgttcgctgcttattacttcatggcatttgtagttt 361

                                                                       
Query: 193 agttttgacaccttggcacttttgtatttctgactaatttgctgcattttctagttggat 252
           ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agttttgacactttggcactcttgtatttctgactaatttgctgcattttctagttggat 301

                                                                       
Query: 253 cagtgcatcacatgtgaaaccgcagtatttgaatttaccgtctgtgaaataatttagttc 312
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cagtgcatcacatgtgaaactgcagtatttgaatttaccgtctgtgaaataatttagttc 241

                                       
Query: 313 caactcagattttatggggagttcattt 340
           ||||||||||||||||||||||||||||
Sbjct: 240 caactcagattttatggggagttcattt 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)