BAC Information

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BAC

Clone NameMSMg01-370O07
Chromosome1 (Build37)
Map Location 95,001,182 - 95,001,517
singlet/doubletsinglet
Overlap genenone
Upstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a
Downstream geneAgxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370O07.T7 (MSMg01no370_o07.b1)MSMg01-370O07.TJ (MSMg01no370_o07.g1)
ACCAG477531AG477532
length792964
length of high quality
(start - end)
426 (43 - 468)---
definitionCHROMAT_FILE: MSMg01no370_o07.b1 PHD_FILE: MSMg01no370_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:04 2005CHROMAT_FILE: MSMg01no370_o07.g1 PHD_FILE: MSMg01no370_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATTGAATTACTGAATATTTTATATATGATGATATAGCTGACTATTAT
AAGTAGATTAAGTTAGATTTAAAGGTAGAAGCAAAGTAGACTTAAAAATT
CCAAAAATTGACTGGGCTGTGATGGCGCACACCTTTAGTCCTAACACTGC
TGAGGCAGAGGCAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGGTCCAC
AGAGTGAGTTCCAGGGCAACAAAGGCTTCACAGACAAACCCTGTCTTGAA
AATAAAATAAAATTAATTAATTAATTAATTAAAGATTAAAATACAGTAAA
ATAATGAAAATCCAAATTCTAAGAGTGGGTTAACTAAAAAAATACGGAAA
TTTTAACATAAAAAGCTAGTGGGGACGGGAGAACATAAAAAGCTAGTGGG
GACGGGAGAGGAGGCTCAGTTGTTCAGAGCACTGGCTGTGGTATAGAGGG
CCAGGCTTCAGTTCCTAGCATGCACATGGAAGCTATGGTCCTCTGTAATG
CCAGTTCCAGGGGATCCAATGCCCCCTTCTTCACTCTTTCTGGCTTCTGA
ATGTATGTGGTATGCCTACTTATTTTACTTCTGGCCTATGAACCTGCCAT
GAACATATCCTTGTTGCTTTCACTGCCAAATCATTTTCAACTTCGTTATG
TCCTTCACCCCATGTTTCCCCTACTTCTCTTATTCTTGTCCCCGCCTACC
TTTCCCTTCTTCTATCCACATCTTACTCCTTCTTCCGCTTCG
ACATCACCTATTTAAGTATGAGTCCCTGTTTCAAAAATAAGCGGAGAACT
AGATAATTTTTCCGCACACACTGATTACATAATGAACCGTCACCAACCTT
TACATCCTTTAATTTGTGTCGAGCCCCGGGCCGTATAGATATATTTGTAT
TTTTTTTTGGTTTAAGATATTTCACCAGTCGATGACTGCTGTCTCGCTGT
TGTATAAGGCAGAGGTCACCAGGCGCGCACAGATCGCACGCGAGCGCGGC
GAGTTTCCGTTGAGTTGCATATCTGCTGAGACCAGATACGCTTGTCTGAA
AAGTGTAGTCATCGTTCCCCACCCCGTACTAGTTTCTCCATATCCGCACT
ACCTTCTTACTTTTTGCTATAAATAATATTTTTATGATAAGAACTGGAGT
CACCACGCCGTTTATTTATAAAAGCGAAAAATAAATTGATCAGGTTTTGC
GCACGCGCGCCTCGCGCGCCCCTCGTCGGATTCACGCGCGTACTTTATCT
CATTTTTCGCCCACGCACTTACCGCTATGTTTACCCCGTGCGCGACGCGT
AATTTTGAGGCAGGTGGGTTATACCGCGGCGGATATACATTAAAAAATCA
GTATGCCCTATCAGCAACGCTACTAATAGCACTGTAGTACTTATTCGTCT
TTGGCCGACGATAGTGCAATACTTATTACGCCCGCCTAGCTGGTAAATCG
CGGATTAATCGACGAACATTTTTCAATTCTACCCATCGGGGCGGACTTCA
CGCACTATACTAGCGCCGCGTACGGCAGCCGCACAATATAATGACCCCCA
TTGCGCGCCTAATAATTACGCCCCAAATTAAACCACCCTATGATCTATTT
GATGAACGCCAGTGATGGCGATAGGTAGATGTCTAAGTAGCGATGACCGC
GCGCTCATCCTGCTAAATTATATTTATCTCCGCCTATCACCNCACTAACT
ATAAGAGGTATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_o07.b1 MSMg01no370_o07.b1 CHROMAT_FILE:
MSMg01no370_o07.b1 PHD_FILE: MSMg01no370_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:04 2005
         (426 letters)



>mm_chr1_95000692_95001517
          Length = 826

 Score =  588 bits (304), Expect = e-172
 Identities = 330/340 (97%), Gaps = 4/340 (1%)
 Strand = Plus / Minus

                                                                       
Query: 87  aagcaaagtagacttaaaaattccaaaaattgactgggctgtgatggcgcacacctttag 146
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 826 aagcaaagtagacttaaaaattccaaaaattgactgggctgtgatggcacacacctttag 767

                                                                       
Query: 147 tcctaacactgctgaggcagaggcaggcagatctctgtgagttcaaggccagcctggtcc 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tcctaacactgctgaggcagaggcaggcagatctctgtgagttcaaggccagcctggtcc 707

                                                                       
Query: 207 acagagtgagttccagggcaacaaaggcttcacagacaaaccctgtcttgaaaataaaat 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 acagagtgagttccagggcaacaaaggcttcacagacaaaccctgtcttgaaaataaaat 647

                                                                       
Query: 267 aaaattaattaattaattaattaaagattaaaatacagtaaaataatgaaaatccaaatt 326
           ||||| ||| ||   |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 646 aaaataaat-aa---attaattaaagattaaaatacagtaaaataataaaaatccaaatt 591

                                                                       
Query: 327 ctaagagtgggttaactaaaaaaatacggaaattttaacataaaaagctagtggggacgg 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctaagagtgggttaactaaaaaaatacggaaattttaacataaaaagctagtggggacgg 531

                                                   
Query: 387 gagaacataaaaagctagtggggacgggagaggaggctca 426
           |||||||||||||||||||| ||| |||||||| ||||||
Sbjct: 530 gagaacataaaaagctagtgaggatgggagaggcggctca 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)