BAC Information

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BAC

Clone NameMSMg01-371B22
Chromosome1 (Build37)
Map Location 194,246,523 - 194,246,779
singlet/doubletsinglet
Overlap geneKcnh1
Upstream geneLOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371B22.T7 (MSMg01no371_b22.b1)MSMg01-371B22.TJ (MSMg01no371_b22.g1)
ACCAG477705AG477706
length803877
length of high quality
(start - end)
269 (77 - 345)49 (84 - 132)
definitionCHROMAT_FILE: MSMg01no371_b22.b1 PHD_FILE: MSMg01no371_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:24 2005CHROMAT_FILE: MSMg01no371_b22.g1 PHD_FILE: MSMg01no371_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAAAACCTCTTACCAGCTTC
TCAGATGTAGTCTTTGTGTCTTTGTCCTTTTTACATGTGTTTTGTTTTGT
TTGTTTGTTTGTTTTTTTTTGCTTTATCATGATATTTATTTTTAATTAAA
TCACCCCCTTCCTTTTCTTACTTCTACTCCTCCCATGCCTAACATCCCCA
TCCCAGCACAGGGCAGTTCAGTCCCATCCCCATAGCCTCACTGCGTGTCC
TCATAGGATGGCATGTAGGTCCCCAGGTTACTGCTTGCTCTGAGATGCCT
TCGTGCATTTGCCGATTTGTAAGACCACTTTGCCTTTGCCTGCATAATGT
GCTCCTTTCAGTCATTGTTCACCCCTGCACACTCAACATCCTCCCCTGCC
CTCTACTATCATGGCAACAACTTCCTCACCATTCCTACAATCATTCTCTT
CTACTACCAACATCCCTCCTTCTTCCCCCCTTCACCCCCTCAACCTTACC
CTCCAATTTCCCTCCTCCTAACCATCACTCTCAATCCCTCAAAACTTTTA
CCCCCAATCACATATCATCATCTCCCTTCATATCCCTCACTCCACCCCAT
ACATGCTCATTCTCTCACTTTTTCTCCTTAACTCTACCCCCCAATCCTAT
TAAAACACCTATCCAACCCACCCCTCTTCATCTCCCCTCCTCTACTATTC
CCCTACATCACTTCCCCCTCACCTCAACCCTCAACACCTTATCACCCTTC
AAA
NNCCCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGGATC
CGCCGGAATTCAAAACCATNTGTACGCTATTCAGTGAGTAGTAGGCAAGT
ATATTATAAGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCCCCC
CCCCCCCCCCCCNCCNCCCCCTCCCCCCCCCCCCCCNCCCCCCCTTTCCT
CCCCCCCCCCCCNCCCTTTNCCCTTTCCTTCCTCCTCCCCCTCCTCCCCC
CCCNCCCCCCCCCTCCCTCCCNCCTCTCCTCCCCCCCCTCTTCCCCCCCC
CCCCCCCCCCCCCTTCCCCTCCCCTCCTCCCCTCTCCCCCCCCCCCCCCC
CCCCCCTCCCCCCCCCCCCCCCCTCCCTTTCCCTCTTCCCCTTCCCTCCT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCCCCCCCCACCCCCCC
CCCTCCCCCATTCTCCTTCCCTCCCCCTCTACTCCCCACACCCCCCCCTC
CTCCCCCCCACCCCCCCACCCCCCCCTTTCCACACCTCCTCTCTCCCCCA
CTCCCTTCCCCTCCTCCCCCCCCCTCCCCATCCCCTCCCTCCACCTTTCC
CCCCCCTCCCACTCACCTACCTCCCCCCCCCCCCCTTCCCCCATATCCCC
CCCTCCCCCCTCCCCCCCCTCCTCCCTCCCTCCCTCCCATAACTCCCCCC
TCTCACCCCNCCCCTACCCCCCCACCCCCCTCTCCTCCCACCCCTTCCCT
CCCCCTCCCCACTCCCCACCCACCTCCCTCCCTCCCTCCACCTCCCCCAT
CCCCCATCTATTCCCCTCTCCCTATCCTTCCCTCCCCTTTCCCTTCCCCA
CCTCTCCTTCTTCCCTCCACCTACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_b22.b1 MSMg01no371_b22.b1 CHROMAT_FILE:
MSMg01no371_b22.b1 PHD_FILE: MSMg01no371_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:24 2005
         (269 letters)



>mm_chr1_194246311_194246979
          Length = 669

 Score =  371 bits (192), Expect = e-107
 Identities = 247/274 (90%), Gaps = 22/274 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaaaaacctcttaccagcttctcagatgtagtctttgtgtctttgtcctttttacat 60
           ||||| |||||||||||||||||||||||||||        |||||||||||||||||||
Sbjct: 213 ttttagaaacctcttaccagcttctcagatgta--------gtctttgtcctttttacat 264

                                                                       
Query: 61  gt---gtt-ttgttttgtttgtttgtttgtttttttttgctttatcatgatatttatttt 116
           ||   ||| || ||||     ||| ||| |||||||||||||||||||||||||||||||
Sbjct: 265 gtggggttctt-tttt-----ttt-ttt-tttttttttgctttatcatgatatttatttt 316

                                                                       
Query: 117 taattaaatcacccccttcctt-ttcttacttctactcctcccatgcctaacatccccat 175
           |||||||| || ||||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct: 317 taattaaaccaaccccttc-ttcttcttacttctactcttcccatgcctaacatccccat 375

                                                                       
Query: 176 cccagcacagggcagttcagtcccatccccatagcctcactgcgtgtcctcataggatgg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cccagcacagggcagttcagtcccatccccatagcctcactgcgtgtcctcataggatgg 435

                                             
Query: 236 catgtaggtccccaggttactgcttgctctgaga 269
           ||||||||||| ||||||||||||||||||||||
Sbjct: 436 catgtaggtcctcaggttactgcttgctctgaga 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)