Query= MSMg01no371_e08.b1 MSMg01no371_e08.b1 CHROMAT_FILE:
MSMg01no371_e08.b1 PHD_FILE: MSMg01no371_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:38 2005
(506 letters)
>mm_chr1_163805474_163806377
Length = 904
Score = 928 bits (480), Expect = 0.0
Identities = 499/506 (98%), Gaps = 2/506 (0%)
Strand = Plus / Plus
Query: 1 cttcagaaagaatggcttttccaagtacacctttagcaatcctttggctcataagctatg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cttcagaaagaatggcttttccaagtacacctttagcaatcctttggttcataagctatg 260
Query: 61 tctgctcctggacatccagagatgtgcttgaaattaacttgaactccatagaacttcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgctcctggacatccagagatgtgcttgaaattaacttgaactccatagaacttcaga 320
Query: 121 gaaagggacagagcgggtcgcaaaaacagtttcctttctagtgccaaagaacatgcccca 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagggacagagcgggtcgcaaaaaccgtttcctttctagtgccaaagaacatgcccca 380
Query: 181 aaactatggttgactccacatctgtgataatcctctcccatcaggctaaccgaaaaaggg 240
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aaactatggctgactccacatctgtgataatcctctcccaccaggctaaccgaaaaaggg 440
Query: 241 cttcatcagggatccctcccgccccacgccgcagggtttcaagaagagcagccccaaaag 300
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 cttcatcagggatcccgcccgccccacgccgcagggtttcaag--gagcagccccaaaag 498
Query: 301 tactattggtcaagattgtgcaagacctgaccagaagaacaacagtttagacattactct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tactattggtcaagattgtgcaagacctgaccagaagaacaacagtttagacattactct 558
Query: 361 taccctcatgacgactcacgttttcaaaatcacaggtccggaacacatcacacctgactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taccctcatgacgactcacgttttcaaaatcacaggtccggaacacatcacacctgactc 618
Query: 421 gcccctgcccttacctcataacgaaagcaaatgaactgacagcaaaactgagtaactcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gcccctgcccttacctcataacgaaagcaaatgaactgacagcaaaactgagtaactcac 678
Query: 481 tcactagctttctgaacactacccaa 506
||||||||||||||||||||||||||
Sbjct: 679 tcactagctttctgaacactacccaa 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 904
Length adjustment: 10
Effective length of query: 496
Effective length of database: 894
Effective search space: 443424
Effective search space used: 443424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_e08.g1 MSMg01no371_e08.g1 CHROMAT_FILE:
MSMg01no371_e08.g1 PHD_FILE: MSMg01no371_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:38 2005
(510 letters)
>mm_chr1_163993151_163994060
Length = 910
Score = 530 bits (274), Expect = e-155
Identities = 343/392 (87%), Gaps = 41/392 (10%)
Strand = Plus / Minus
Query: 5 gaattctttttgaactaaaaaataagcctttatatttctggctgatttaccttagtgagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gaattctttttgaactaaaaaataagcctttatatttctggctgatttaccttagtgagg 292
Query: 65 tgatcaaattatgcggcaatcatacagcaccactatagtaatcagagtttaagacctttc 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgatcaaattatgcagcaatcatacagcaccactatagtaatcagagtttaagacctttc 232
Query: 125 ccactgcctgtactcattctttggacaaaaataaataaataaataaataaataaataaat 184
||||||||||||||||||||||||||
Sbjct: 231 ccactgcctgtactcattctttggac---------------------------------- 206
Query: 185 aaataaataaataaataaataaataaataaataaataaataagagaggtacaattcatat 244
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 205 ------ataaataaataaataaataaataaataaataaataggagaggtgcaattcatat 152
Query: 245 aataattttgatttaagatacatataacccagtccctcatatcttcaaattcagttacct 304
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 151 aataattttgatttaagatacatataacccagtctctcatatctttgaattcagttacct 92
Query: 305 atgacaactgcaatctaaaaatagtaagtagaagattgtagaaataaataatttcctctg 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 91 atgacaactgcaatctaaaaatagtaagtagaagattatagaaataaataatttcctctg 32
Query: 365 tatagcgtgatgaaaacagagtagcagcacac 396
|||||| |||| ||||||||||||||||||||
Sbjct: 31 tatagcatgat-aaaacagagtagcagcacac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
