NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGCATGTGTCTGTCTTACCTTCGC
TAGCCTGAGTAGAGATTTAATAATGTATTGATCTTTCCAAAGGATGTGAG
CATAATGCCCACTTCTTTTAATTCTATGGATTTCTACTTTAATTTCATTG
AATCTTTGTCTTCATTGGGATGAAATCACTCCTCATAAGATTGTTCATTT
ATGCCTCCCTTAGCTTCCGACATATACAAAGCTGTATGTTTCCCCTTAGC
CACTGCCTTTGCTGTGTTTCAGATTTAATAATTTTTAGACCTCAGTTCTT
TTTTAGTGTAGGAGAAAGGGTCACACTTTTGCTTGTCTTACCCCATTAAA
AAACATTACATTCATTTATTTATTGTATGTGTGCAGGTGCCACAATGTGT
CTTTTGAGATCAGAGGACAACTTTGGGGAGTTGGCTCTCTCCTACTACCA
TGTAGTTAGTTCTTAGGGGAGCAAGCTCATGTCCAGAGACTTGGTGGCAA
GGCCTGTATCAGCTGAGCCATCCTCCCCGACCCCCTTTTATTACCTTAAG
TTACACGTTTTAAATGGACCCCTGGTTTATAAATGGGGAAATTAATAAAA
TATTCCCCTTTTTTGCTTCCTTAGGACACCAAAGAAAACCCTCCCCCTGG
TTTGAAAAAATTTTCTCTTTCTACCTTCTTTTCTTCTTCTTGGTGGTTCC
CCACTCCTTATACACTCCTCTGGTATAA

NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGACATTCAGGGCTACACAGAGAAACCCTGTCTCGAAAAA
CCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACAAAAACAAAAATT
ATCGTGCCCCAGTGTAACCATTGTGGTAAGCTAGTTAGTTTTTCGGGCTG
GTGAGATGGCTTGCCGGGTAAGAGCACCGACTACTCTTCCAAACGTCCCG
AGTTCAAATCCCAGCAACCACATGGTAGCTCACAACCATCTGTAACAAAA
ATCTGATGCCCTGGTCTGGAGTGTCTGAAGACAGCTACAGTGTCTAAATA
AATAAATAAATAAATAAATAAATAAATCTTAGAACTGCCAAAATGATTTA
GCAATTTCACTTCTGGACATAGATCCAAAAGAGTCAGAAGCAGAACATTA
AAGAAATCTCAGCAAACTCTCCACTGAAGCATTATTCCCCATAGACAAGA
GATTTAGTATTCCCTGCAGGCTCATGTACTGGAATACTTAGATGCTAGTT
GGTGGGGTATTGTGTAACCCCTGAGATGTGGATCTGACTGAGGGAAATAG
TCACTGGGAGAAAGGTGCTGGTTGCAAAAGAACACTTTCCTCTTCTGAAG
ATTTCAGAAAGTTAGTCCTGGAGACAAAATGATGAAAAACTGGGATCCCG
AATTATGTTTCCCCAAACCCTGTGGGAACAGTTCTTAGTTTTTTTTTGAA
AAAAAA

Query= MSMg01no371_g20.b1 MSMg01no371_g20.b1 CHROMAT_FILE:
MSMg01no371_g20.b1 PHD_FILE: MSMg01no371_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:52 2005
         (432 letters)



>mm_chr1_87501681_87502513
          Length = 833

 Score =  760 bits (393), Expect = 0.0
 Identities = 423/433 (97%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcatgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatct 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagcgtgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatct 260

                                                                       
Query: 61  ttccaaaggatgtgagcataatgcccacttcttttaattctatggatttctactttaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccaaaggatgtgagcataatgcccacttcttttaattctatggatttctactttaatt 320

                                                                       
Query: 121 tcattgaatctttgtcttcattgggatgaaatcactcctcataagattgttcatttatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattgaatctttgtcttcattgggatgaaatcactcctcataagattgttcatttatgc 380

                                                                       
Query: 181 ctcccttagcttccgacatatacaaagctgtatgtttccccttagccactgcctttgctg 240
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcttagcttccgacacatacaaagctgtatgtttccccttagccactgcctttgctg 440

                                                                       
Query: 241 tgtttcagatttaataatttttagacctcagttcttttttagtgtaggagaaagggtcac 300
           ||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 441 tgtctcagatttaataatttttagacttcagtgcttttttagtgtaggagaaagggtcac 500

                                                                       
Query: 301 acttttgcttgtcttaccccatt-aaaaaacattacattcatttatttattgtatgtgtg 359
            |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 501 ccttttgcttgtcttaccccatttaaaaaaaattacattcatttatttattgtatgtgtg 560

                                                                       
Query: 360 caggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggctctctcct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 caggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggttctctcct 620

                        
Query: 420 actaccatgtagt 432
           |||||||||||||
Sbjct: 621 actaccatgtagt 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 833
Length adjustment: 9
Effective length of query: 423
Effective length of database: 824
Effective search space:   348552
Effective search space used:   348552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)