CATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAAAAGTATTTTCTCCTGCA
GTGTTAGGGGACACTGAAGCTGTCATTGCAATACTGGTTATTTTTATTGT
GCATTTGTCTTTGCTGTCCCTGCATTTTAGAATGTCATTTAGAGCTAACT
TAGGGCACATAAAATTGCACTTACCAATAGTGAGCTAAGTTTTAGTTCAG
TAGTCATGTCATATTTGGTCAATAGCCAGCAACTGCCATTGGTGACAAGT
GAATCACCTATAAGAAATGCCAAGTCAGTAAAAGAAACAAATCAGTGGAA
GATAAAGGAGTCTGAAGTTAGCAGAGAAAAAAAAATCAATAAGGGAAAAA
GAACCAATATCTTAAAGCAAATGAAGAGAGCAGCTATTAGAATTACACCT
GTTCCACTAAAGCCAAACACACAAGCATGTCTGACTTTCACTAACTCTTT
TTATTTTAAATGCATAAGTTCATTGTGTGTGAGAATAGATTGGAAAATGT
GCATCACATTTTATCGTCCCTTTGTAAAGAAACAAAGTTGGAGCAAGACC
CTAACTTGCAAACTCTTCCTGTACAGGAACCCAAAGGGCCATTCCGAACC
CATCTTTTTTCTTTAGGTAATTCCGAAAGAAAAAACAAAGTTTCTGGTGT
CTAAAATGGGGATTATTAACCCCCCAAAAAACTTTATGTCTGTGCTCCAT
TCCCCCAAAAAAACGGATTGGTTTCTTAAG

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCCCCTTCTTCCCTGCCAGTCCTCCCCACTCCCTGGGGCCTCAAGG
TTCTTGAGAGTTAGGCGAATCTTCTCCCACTGAGGCTAGACCAGGCAATC
CTCTGCTTTATATGTGTCTGGGAGACTCTGAACAGCTAGTATAGGCTGCA
GGGCTGGTGGCTCAGGGCTCAGTGTCTGAGAAATCTCAGAGGTCTGGGTA
GGTTGAGACTGCAGTTCTTCCTATTACCCAGGTGGCCCTCTTCCTCAGAA
GGAAATTTTCTTAGGGTGAAGTTTCATTGGCTGAGGCTTAAAGTTCATTA
TATGCATGGAGAGGCATTTCAGGAAATTGAACCTCTAATTTCATCAAGGA
TTATGTGAAGTTCTTCAGGTAGAATGTGGGGTCGGGTTCCCCAGATAATA
TAGAGAAGAGCAAGCCCAGCTGGGAAAAGGAGGTCTGCATTTTGCACAGT
AGCTCCAGACATGGTAGACTACATCCTTTATATATCAGGATCTTCTAACA
TGTAATAGCAAAGAACTGATTTGGTCTAGCCACGGGGTGACAGTGAAACG
ATGTCAAATCCTTTTGGGCATATGTCACAACAGATGGATTAGTTGGGTCA
TTATTGTCATTTGTTTTTCAATTTTTAACTTGTCGTCTCTCCTCTTTTCT
ACTATGGGTTGGTCTATCCTCGTTGTTTTCATCCATCTTATTTTGTTTTT
TTTCCTATACTGCGTTTTACACTTTTTTTCC

Query= MSMg01no371_m16.b1 MSMg01no371_m16.b1 CHROMAT_FILE:
MSMg01no371_m16.b1 PHD_FILE: MSMg01no371_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:22 2005
         (449 letters)



>mm_chr1_97196587_97197434
          Length = 848

 Score =  837 bits (433), Expect = 0.0
 Identities = 445/449 (99%), Gaps = 1/449 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaaagtattttctcctgcagtgttaggggacactgaagctgtcattgcaatactggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gcaaaagtattttctcctgcagtgttaggggacactgaagctgtcattgcaatactggtt 589

                                                                       
Query: 61  atttttattgtgcatttgtctttgctgtccctgcattttagaatgtcatttagagctaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 588 atttttattgtgcatttgtctttgctgtccctgcattttagaatgtcatttagagctaat 529

                                                                       
Query: 121 ttagggcacataaaattgcacttaccaatagtgagctaagttttagttcagtagtcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttagggcacataaaattgcacttaccaatagtgagctaagttttagttcagtagtcatgt 469

                                                                       
Query: 181 catatttggtcaatagccagcaactgccattggtgacaagtgaatcacctataagaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 catatttggtcaatagccagcaactgccattggtgacaagtgaatcacctataagaaatg 409

                                                                       
Query: 241 ccaagtcagtaaaagaaacaaatcagtggaagataaaggagtctgaagttagcagagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 408 ccaagtcagtaaaagaaacaaatcagtggaagataaaggagtctgaagttagcagag-aa 350

                                                                       
Query: 301 aaaaaatcaataagggaaaaagaaccaatatcttaaagcaaatgaagagagcagctatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaaaatcaataagggaaaaagaaccaatatcttaaagcaaatgaagagagcagctatta 290

                                                                       
Query: 361 gaattacacctgttccactaaagccaaacacacaagcatgtctgactttcactaactctt 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gaattacacttgttccactaaagccaaacacacaagcatgtctgactttcactaactctt 230

                                        
Query: 421 tttattttaaatgcataagttcattgtgt 449
            ||||||||||||||||||||||||||||
Sbjct: 229 gttattttaaatgcataagttcattgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 848
Length adjustment: 10
Effective length of query: 439
Effective length of database: 838
Effective search space:   367882
Effective search space used:   367882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)