BAC Information

Click to search

BAC

Clone NameMSMg01-371N14
Chromosome1 (Build37)
Map Location 170,141,128 - 170,141,289
singlet/doubletsinglet
Overlap genePbx1
Upstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371N14.T7 (MSMg01no371_n14.b1)MSMg01-371N14.TJ (MSMg01no371_n14.g1)
ACCAG478254AG478255
length7891,170
length of high quality
(start - end)
162 (76 - 237)---
definitionCHROMAT_FILE: MSMg01no371_n14.b1 PHD_FILE: MSMg01no371_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:26 2005CHROMAT_FILE: MSMg01no371_n14.g1 PHD_FILE: MSMg01no371_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAGAACAGAAGAGGAGGGAAGGAC
AATGATGGAAGAGATGGGATCTAGATCCTAGTGGATGAACAAGAACTTTG
AGAGTCAAGACCTGTTGAGGGTACCAAGAGAACGGACCAGAGCTAACTGC
CTCCTAGGCAGCCCTCCCTACTCCAGGGGCTGTGATGGGGAAGATAGGGA
TGAGCCCAACATANNGAGACGTGGAGATAAAGGCAAACTTTCTCAAGTAT
GCCAGAATCACTGCTGGCTGGGCCCATATGCCCCGGGGCCCCCCAAAAAA
AAAATCTTTGCCTTTTNTTGTGAGACNNNTGNCTACAGGTTNGGCTGGGG
GGGGGTAGGGGGGGGGGGGGGNTNTTCTTGTTTTGGNNNNNNNNNNNNNT
CTCTTGGNNNNNNNNNNNNNNNNNGCGTGTGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNANNNNNANANANANGAAATG
TTTAATTATTTTGGCGTGCGTGATGGCTAACTGATTTAATTACAGTAATC
TGTTGCTTAGTGTACCTGGGCAGGCTTCGGCACAGCGCTCCCCGGTCTCT
CATATCTCTTGCTTTTGTAAGTACCACACCTAGCGTATCACCATCAAGGA
ATCTGGTCTGAAACGGTTTCGAGATAGAAATAGTAATATGAAATATATAA
TGTTGCGTGCTAGTTGAAGTACAGAGTGGTGGCACAATGTGTGCGATGTG
GTGACAGGTCACGCTGTAGATATACGTCGCTACATCGCGTGTCAGGCTTT
TCATTGAATTAATATAAGATATAGGGGCCGGTGCGGCGCTGTTGCTATAA
AGTGCCACTTGTGTGCTCTGTGTTATGGATGATAAGTAGTTGCATGGATG
GCTGGATGCTGTTATTATATATATTGTTGATAAGATATATTCTTTGTGGA
GTGTGAGATCAATTACTAGGATAGTGAGGATGTGACGTGTGTGATGTGGA
CCTGTCAGATTACTGTATGGTGTACATATTTTTATGTTGTGTCCGCTAGA
GCTGTGGCTTCCTGGATGGGTTCAGCGAGTAATGTCACGCGTCTCCGATA
ATAATAACACATAACAGCATGTGCATACAACGGTAATTTGTCGACCTCGA
TTACTTCGTTATGTTGATGTTGGCGTGTGCCAGGTCGCGTGAGGCTATTC
TAGCTACGGTGTGCTCGCACTGCATCGAGGTCAGGTATGACTCGGGACGA
TGGTTGGAAGTTGCATCTGCCCAGAGTGTGTCTAGTGTACTGCTGTGCCT
ACTCGACTTCATCTATGTACGGCAGCTTACTTCTTTTTGTTGCGATTAGT
GAATTGTTATACGCGTCTATGTGCTGTTGTCACCTTTTATATATTGATCG
CAAAATTATAACATGCACGAGTAACATTGAATATGGCTATGTGGATATGA
GTGTAACTCCGTTGCGATTATTGATTTAGAACCAATTGGTGTCATATAAG
GCGATCTATGCTGCCCTCATACGACGCTGTCATTGGTCTCTACTATGTGG
CCAGCTGTCTTGAGTGAGCTATGGCGCATTCGATTGCTCCGTCGCGCGTG
TCTGTGTCCAGTGGTCTGTGTCCGCTACGAACTGCCTTGCATATATTAGN
TTCGTCCACAGAGTACCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_n14.b1 MSMg01no371_n14.b1 CHROMAT_FILE:
MSMg01no371_n14.b1 PHD_FILE: MSMg01no371_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:26 2005
         (162 letters)



>mm_chr1_170140928_170141489
          Length = 562

 Score =  313 bits (162), Expect = 3e-90
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaacagaagaggagggaaggacaatgatggaagagatgggatctagatcctagtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaacagaagaggagggaaggacaatgatggaagagatgggatctagatcctagtgga 260

                                                                       
Query: 61  tgaacaagaactttgagagtcaagacctgttgagggtaccaagagaacggaccagagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacaagaactttgagagtcaagacctgttgagggtaccaagagaacggaccagagcta 320

                                                     
Query: 121 actgcctcctaggcagccctccctactccaggggctgtgatg 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgcctcctaggcagccctccctactccaggggctgtgatg 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)