BAC Information

Click to search

BAC

Clone NameMSMg01-372D16
Chromosome1 (Build37)
Map Location 154,953,822 - 155,134,521
singlet/doubletdoublet
Overlap geneNmnat2, Lamc2, Lamc1
Upstream geneLOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097
Downstream geneEG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372D16.T7 (MSMg01no372_d16.b1)MSMg01-372D16.TJ (MSMg01no372_d16.g1)
ACCAG478541AG478542
length733752
length of high quality
(start - end)		456 (43 - 498)413 (74 - 486)
definitionCHROMAT_FILE: MSMg01no372_d16.b1 PHD_FILE: MSMg01no372_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:55 2005CHROMAT_FILE: MSMg01no372_d16.g1 PHD_FILE: MSMg01no372_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,134,070 - 155,134,521)(154,953,822 - 154,954,234)
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGTATTCACTACATCATCCCTAACTGGAAACACACATGAAACGTGGG
TACACATTGATCAGTTGCTGTCAGTGTTGTGACCAAAGGAACGATTGGTT
CTGAATTCTTCAACTCGTTGTTGGGCTGTAGGAAATAAATAAATGAGTGG
GAAACGTATTAGTCTGAGCTGAGATAGTTGGTTGTCAGTGATTGTGGGGA
ATGTCTTTTCTTTAATTTTGTGAGGCTGGGTCTCACTGGAGCCGAGGCTG
GCCTTGCATTCCTGGCAATTCTGTGACTTCAGCTTCCAAGATTCATATAG
ACATTGGCTCTTAAGTCAAACTTTAAGAAAAACAAAAAAACAAATAGGAT
TCCTTTTTACTTCTGTGTAGTCTGTCAGAGCAGATGCTCGCAGAGGCCAG
AGGAGTCCGCTGACCCTCCTGGAGCTGGAGTTATGGGAGGTTCTTAGCTG
CTCAGCGTAGATGCTGGGACTGAACTGGNGTTCTCTGTAAGAGCAGTATT
GGTCCCTTAACCACTGAGACATCTCTCCTTTCCCCAGCTTATGCTCTTTA
TAAATACAGAAAAATATTTTTGAAATATACAAGGTTATCTTGTTTTAACA
ACAAATCCTTATGTAAAAATAGTCTAACTTTCTGAAATCCTTGTGTATGA
GTTTTGCCAGCCCTCACCTTTGTCCCATCATCG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTGGTTTAATCATATGAGATAACAG
TCACAAGTCCCAGGAATTTGGACTTGGGTATGTGGGGCAGGGGAAGTCAT
TACACCAGTGGAGACTTGGACCCAGGTATAAATGAGAACTGAGCAGAGTC
ATATATGTTTTTTGTTTTGTTTTATTGTTTTTAGACAAGGTCGCATATAA
CCCAGGCAGGCTTTGAACTATTTATTGATCTTCCTACCTCCACCTCCCAG
TGCAGGGATTTCAGACATACTCCACCAAACCTGGCTCATACATTTGTTTT
GAAGACAGAATTAATTGAATTTCCTTGTAGGCTGAATATAAGATATAAAA
GAAAGGGGTACAAAGACCACAGGAAAACACTTCTTTGGGGCAGAGGGAAT
CTGTATTGTGTAGTTTTCTATTGCTGTGATAAAACACCAAGAAAAAGACA
AGTTACTGACGATAGAGTTTATATGGGCTTTCTGTTCTAGAGGGTTAGAG
TCCATGATTGAATACACAGGTTCGTGGCCCTGGCTTGAGGACCTTTATGC
TTCCATTTGCATCTTGACCCCCACACAGACCTTCGCCTTGTTTTGATCCG
TATGCCTTTGCTTAACTCACGGTTTTTCCCCCGTGTTTTATCTTCTTTTT
TGCCACGCCCCTGCTTTTTCCAATCTTTTTATTTTTCCTTCCTCCCCCCC
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_d16.b1 MSMg01no372_d16.b1 CHROMAT_FILE:
MSMg01no372_d16.b1 PHD_FILE: MSMg01no372_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:55 2005
         (456 letters)



>mm_chr1_155134011_155134866
          Length = 856

 Score =  866 bits (448), Expect = 0.0
 Identities = 451/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtattcactacatcatccctaactggaaacacacatgaaacgtgggtacaca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcatgtattcagtacatcatccctaactggaaacacacatgaaacgtgggtacaca 452

                                                                       
Query: 65  ttgatcagttgctgtcagtgttgtgaccaaaggaacgattggttctgaattcttcaactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttgatcagttgctgtcagtgttgtgaccaaaggaacgattggttctgaattcttcaactc 392

                                                                       
Query: 125 gttgttgggctgtaggaaataaataaatgagtgggaaacgtattagtctgagctgagata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gttgttgggctgtaggaaataaataaatgagtgggaaacgtattagtctgagctgagata 332

                                                                       
Query: 185 gttggttgtcagtgattgtggggaatgtcttttctttaattttgtgaggctgggtctcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gttggttgtcagtgattgtggggaatgtcttttctttaattttgtgaggctgggtctcac 272

                                                                       
Query: 245 tggagccgaggctggccttgcattcctggcaattctgtgacttcagcttccaagattcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggagccgaggctggccttgcattcctggcaattctgtgacttcagcttccaagattcat 212

                                                                       
Query: 305 atagacattggctcttaagtcaaactttaagaaaaacaaaaaaacaaataggattccttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 atagacattggctcttaagtcaaactttaagaaaaacaaaaaaacaaataggattccttt 152

                                                                       
Query: 365 ttacttctgtgtagtctgtcagagcagatgctcgcagaggccagaggagtccgctgaccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttacttctgtgtagtctgtcagagcagatgctcgcagaggccagaggagtccgctgaccc 92

                                           
Query: 425 tcctggagctggagttatgggaggttcttagc 456
           ||||||||||||||||||||||||||||||||
Sbjct: 91  tcctggagctggagttatgggaggttcttagc 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_d16.g1 MSMg01no372_d16.g1 CHROMAT_FILE:
MSMg01no372_d16.g1 PHD_FILE: MSMg01no372_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:55 2005
         (413 letters)



>mm_chr1_154953622_154954434
          Length = 813

 Score =  760 bits (393), Expect = 0.0
 Identities = 408/413 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttggtttaatcatatgagataacagtcacaagtcccaggaatttggacttgggtatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttggtttaatcatatgagataacagtcacaagtcccaggaatttggacttgggtatgt 260

                                                                       
Query: 61  ggggcaggggaagtcattacaccagtggagacttggacccaggtataaatgagaactgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggcaggggaagtcattacaccagtggagacttggacccaggtataaatgagaactgag 320

                                                                       
Query: 121 cagagtcatatatgttttttgttttgttttattgtttttagacaaggtcgcatataaccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 cagagtcatatatgttttttgttttgttttattgtttttagacaaggtcgaatataaccc 380

                                                                       
Query: 181 aggcaggctttgaactatttattgatcttcctacctccacctcccagtgcagggatttca 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcaggctttgaactatttactgatcttcctacctccacctcccagtgcagggatttca 440

                                                                       
Query: 241 gacatactccaccaaacctggctcatacatttgttttgaagacagaattaattgaatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacatactccaccaaacctggctcatacatttgttttgaagacagaattaattgaatttc 500

                                                                       
Query: 301 cttgtaggctgaatataagatataaaagaaaggggtacaaagaccacaggaaaacacttc 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 cttgtaggctgaatataagatataaaagaaaggggtacaaagaccataggaaaacacttc 560

                                                                
Query: 361 tttggggcagagggaatctgtattgtgtagttttctattgctgtgataaaaca 413
           ||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 561 tttggggcagagggagtctgtattatgtagttttctattgctgtgataaaaca 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |