BAC Information

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BAC

Clone NameMSMg01-372D23
Chromosome1 (Build37)
Map Location 84,145,679 - 84,146,098
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream geneLOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372D23.T7 (MSMg01no372_d23.b1)MSMg01-372D23.TJ (MSMg01no372_d23.g1)
ACCAG478555AG478556
length768795
length of high quality
(start - end)		425 (37 - 461)414 (66 - 479)
definitionCHROMAT_FILE: MSMg01no372_d23.b1 PHD_FILE: MSMg01no372_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:57 2005CHROMAT_FILE: MSMg01no372_d23.g1 PHD_FILE: MSMg01no372_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTAA
GGGGGTACTGCTGTTCCACTTGAATTCAAAGAACCTCAAGAAAAGTGACA
TACAATCTTCAGAGAGAAGACAGAGTCATATCCTGAATGGAAAGTAGGCA
AGTGAGAAGGAAAGAAAACAGGGAGAACGTCATCTGCTTCCTCATTTATG
TTCAGTGCTCAAAGCAGGGAGCATGGCCCAGGAAAACATCCATCGCTCAG
GATCTCCAGCTGCACTGAGAAGGTGCAGGATGACTTCTGAGTAAAACCAG
ACTTGAGGCAGATGAACTCAGCTCCAAACAGGGTTTCTTTCTTTGTTTTT
GTTTTTTTTTATTATTATTATTAGATATTTTCTTTATTTACATTTCAAAT
GTTATCCCCTTTCCTAGTTTCCCCTCTGAAAACCCCCTATCCCCTCCCCT
CTCCTCCTGCTCCCCAANCCATCCACTCCCATTTCTGGTCCTGGGATTCC
CCTATACTGGGGCATAGAACCTTCTCAGGACCTAAGGGTTCTCCTCCCCT
TGAAGAACAATAAGGCACCCCCCGTAAATATTTAGTAGAGCTCCTAGTTC
CTCCTTGGGTTTCCTTGAAGGGGGGAAAATCCCAAAAGATCCGGGTAATG
GTTACTAAAATTAAAGGTCTCCAAGGGGTAAAACCCCTTTCTTCCCCGCA
TTTATTTCTCTCCCCTGATTCTTGGTCTTTCTCCCTTGGTTTTATCCCCC
TCTCTACTGTATTTTGTG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTAATTGAGAGTTTTG
CTGAGTATAGTAGCCTGGGCTAGCATTTGTGTTCTCTTAGGGTCTGTATA
ACATCTGCCCAGGATCTTCTGGCTTTTATAGTCTCTGTTGAGAAGTCTGG
AGTAATTCTAATAGGCCTGCCTTTATATGTTGCTTGACCTTTTTCCCTTA
CGGCTTTTAATATTCTGTCTTTATTTAGTGCATTTGTTGTTCTGATTATT
ATGTGTCGGGAGGAATTTCTTTTCTGGTCCAGTCTATTTGAAGTTCTGTA
GGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGGTATGGGAAGTTTT
CTTCTATAATTTTTTTGAAGATATTTGCTGGCCCTTTAAGTTGAAAATCT
TCATTCTCATCTACTATTATCTGTAGGTTTGGTCTTCTCATTGTGTCCTG
GATTTCCTGGATGTTTTGAGTTAAGACCTTTTTGCTTTTTGCCTTTTCTT
TGCTCGGTGCGCCCATATTTCCTATGGAAACCTCTGCCCCCACAAATCCC
TTTTCCCCTCTTGGAATCCTTTTGCGAAGTCTCAATTCCATTTGTTCCGA
ATTTTTTCTTAGTGAGTTTTTCCCCCCAACATTTTTCCTTGTGCGTTTTT
TATTTTTTTCCACTTCTTTTTTAATCTTTTATGTTCCGTTTTATTTTCCC
CCCCGCCGCCCTTTTTTTTTTTTTTCCCTTCTCTTTTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_d23.b1 MSMg01no372_d23.b1 CHROMAT_FILE:
MSMg01no372_d23.b1 PHD_FILE: MSMg01no372_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:57 2005
         (425 letters)



>mm_chr1_84145474_84146298
          Length = 825

 Score =  789 bits (408), Expect = 0.0
 Identities = 417/420 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctaagggggtactgctgttccacttgaattcaaagaacctcaagaaaagtgacat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctaagggggtactgctgttccacttgaattcaaagaacctcaagaaaagtgacat 265

                                                                       
Query: 66  acaatcttcagagagaagacagagtcatatcctgaatggaaagtaggcaagtgagaagga 125
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 266 acaatcttcagagagaagacagagtcacatcctgaatgggaagtaggcaagtgagaagga 325

                                                                       
Query: 126 aagaaaacagggagaacgtcatctgcttcctcatttatgttcagtgctcaaagcagggag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagaaaacagggagaacgtcatctgcttcctcatttatgttcagtgctcaaagcagggag 385

                                                                       
Query: 186 catggcccaggaaaacatccatcgctcaggatctccagctgcactgagaaggtgcaggat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catggcccaggaaaacatccatcgctcaggatctccagctgcactgagaaggtgcaggat 445

                                                                       
Query: 246 gacttctgagtaaaaccagacttgaggcagatgaactcagctccaaacagggtttctttc 305
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 446 gacttctgagtaaaaccagacttgaggcagatgaactcagctccagacagggtttctttc 505

                                                                       
Query: 306 tttgtttttgtttttttttattattattattagatattttctttatttacatttcaaatg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttgtttttgtttttttttattattattattagatattttctttatttacatttcaaatg 565

                                                                       
Query: 366 ttatcccctttcctagtttcccctctgaaaaccccctatcccctcccctctcctcctgct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttatcccctttcctagtttcccctctgaaaaccccctatcccctcccctctcctcctgct 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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