BAC Information

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BAC

Clone NameMSMg01-372E03
Chromosome1 (Build37)
Map Location 188,884,874 - 189,071,294
singlet/doubletdoublet
Overlap geneSpata17, Gpatch2
Upstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneEsrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372E03.T7 (MSMg01no372_e03.b1)MSMg01-372E03.TJ (MSMg01no372_e03.g1)
ACCAG478563AG478564
length713715
length of high quality
(start - end)
149 (80 - 228)495 (79 - 573)
definitionCHROMAT_FILE: MSMg01no372_e03.b1 PHD_FILE: MSMg01no372_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:57 2005CHROMAT_FILE: MSMg01no372_e03.g1 PHD_FILE: MSMg01no372_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:10:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,884,874 - 188,885,015)(189,070,800 - 189,071,294)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATGAATGCCAGNAAGGTTACAGTCATACCACAGAGGAAGAG
AGTGAGAATCGTGAGTCACACCAGGATCTGTCCTAGTACACTGTCAACCT
TAGTCCACTCACATTCCCCAAAGAAATCACTCACCATAGCTCTGAAATTG
TCTGGATGCCCAACTCCTCTCGGCTCGTTTGNNAAAAGTGTTAAGCCTCT
AAGCATCCTTTGGGGNNNNCNNNNNNNTNTTNNTTNTNGGTTNTTTGTTT
TTTTTGGTTGTTTTTTTGGTTTTTTTTNTGGTTCCTTTTTTTGTTTTTTT
TGTTTNNTTTTGGGTGGTGGGGGGGTTGTTNTTGGGTTNTGGTTTNTTTN
NGTNNTTGGGGTTTTNTTGTTGTGTTGGTTTTTNNTTGTTTGGGTGGTTT
GTTTTTTGTGGTTGTGTGTGTGTTTTGNTGTTGGTTGGTTTGGTTTTTTG
TGTTTGTTGTTTTTTGGTTTTTTTGTTGGTTGGGGTTTTTTTTTGTTTTT
GTTTTGGGTGGGGGTGTTGTGGGTGGGGGTGGGGTTTTGGGCGTTGGGGG
GTTTTGGGGTGTGGGGGGGGGGGTGNGTGTGTTTTTGGGTGTGGTTGTGN
TTGGTTGTNGGTTTTTGTGNGTTTTTGCTTTTTTTTTGTTTTCGCCCCTT
TTTTTGTTTTCCG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCTTGGCGAGGCAGCTGCACC
TTTAAGGGCATCCAACGGAAAGTAAAGGCATCGCAATAACAGACGTCGTG
TTTAAGACGTTAAGGGCAGACAGCACAAGACTATATTCCAGGGGAAAACG
AGGGCGACGAACTAGTGGAAGGAATGGATTCTAGAAGCTTCTATCACTGT
GCGTGTGCCTGCTTGGTTTTTGTTCATCAATTTGTTGGATGTTGGGATAG
TTTTTAGAGATGGAGTCATGGAGTCTGGGCTAAGCGTAAACTGCTGCTGC
CCCAGGCTTATAAGGAAGGCCGGGATCACGGGTGAGCACCCACGCATTCA
CAGGAGTAATGCCAAGCTTTTGGCTGAAGACAAATGATTTCTATAAAATT
TCAAACAATTTCAAAAAATAAATTAAACATTCAACAATAAAATTTCCTGC
ATCCATCTTCAGAATGAAAACCCAGTTATATCTTAATCAACCTGTACAAG
TGAACAATAAATTTAATTTCATTCTTGTGGGGTTTCAAAAGTGAACCTTC
CAGCAAGAGCACTATAACCGGAAGCAGGGAGCCCAGGGCAGCTCCCAGCA
AGCTGAGTCTGTTAAAATGTGGACCCTGGCGCCCTGACCCCAGTCCTGTG
TGTCGCTCTCAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_e03.b1 MSMg01no372_e03.b1 CHROMAT_FILE:
MSMg01no372_e03.b1 PHD_FILE: MSMg01no372_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:57 2005
         (149 letters)



>mm_chr1_188884669_188885217
          Length = 549

 Score =  275 bits (142), Expect = 1e-78
 Identities = 142/142 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   taccacagaggaagagagtgagaatcgtgagtcacaccaggatctgtcctagtacactgt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 taccacagaggaagagagtgagaatcgtgagtcacaccaggatctgtcctagtacactgt 265

                                                                       
Query: 66  caaccttagtccactcacattccccaaagaaatcactcaccatagctctgaaattgtctg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaccttagtccactcacattccccaaagaaatcactcaccatagctctgaaattgtctg 325

                                 
Query: 126 gatgcccaactcctctcggctc 147
           ||||||||||||||||||||||
Sbjct: 326 gatgcccaactcctctcggctc 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no372_e03.g1 MSMg01no372_e03.g1 CHROMAT_FILE:
MSMg01no372_e03.g1 PHD_FILE: MSMg01no372_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:58 2005
         (495 letters)



>mm_chr1_189070600_189071494
          Length = 895

 Score =  911 bits (471), Expect = 0.0
 Identities = 489/495 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttggcgaggcagctgcacctttaagggcatccaacggaaagtaaaggcatcgcaata 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 695 accttggcgaggcagctgcacctttgagggcatccaacggaaagtaaaggcatcgcaata 636

                                                                       
Query: 61  acagacgtcgtgtttaagacgttaagggcagacagcacaagactatattccaggggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 635 acagacgtcgtgtttaagacgttaagggcagacagcacaagactatattccaggggagaa 576

                                                                       
Query: 121 cgagggcgacgaactagtggaaggaatggattctagaagcttctatcactgtgcgtgtgc 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 575 cgagggcgacgaactagtggaagggatggattctagaagcttctatcactgtgcgtgtgc 516

                                                                       
Query: 181 ctgcttggtttttgttcatcaatttgttggatgttgggatagtttttagagatggagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctgcttggtttttgttcatcaatttgttggatgttgggatagtttttagagatggagtca 456

                                                                       
Query: 241 tggagtctgggctaagcgtaaactgctgctgccccaggcttataaggaaggccgggatca 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggagcctgggctaagcgtaaactgctgctgccccaggcttataaggaaggccgggatca 396

                                                                       
Query: 301 cgggtgagcacccacgcattcacaggagtaatgccaagcttttggctgaagacaaatgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cgggtgagcacccacgcattcacaggagtaatgccaagcttttggctgaagacaaatgat 336

                                                                       
Query: 361 ttctataaaatttcaaacaatttcaaaaaataaattaaacattcaacaataaaatttcct 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 335 ttctataaaatttcaaacaatttcaaaaaataaattaagcattcaacaataaaatttcct 276

                                                                       
Query: 421 gcatccatcttcagaatgaaaacccagttatatcttaatcaacctgtacaagtgaacaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcatccatcttcagaatgaaaacccagttatatcttaatcaacctgtacaagtgaacaat 216

                          
Query: 481 aaatttaatttcatt 495
            ||||||||||||||
Sbjct: 215 gaatttaatttcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)