BAC Information

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BAC

Clone NameMSMg01-372F08
Chromosome1 (Build37)
Map Location 127,469,906 - 127,629,387
singlet/doubletdoublet
Overlap geneSlc35f5
Upstream geneLOC666998, Actr3
Downstream geneLypd1, E030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372F08.T7 (MSMg01no372_f08.b1)MSMg01-372F08.TJ (MSMg01no372_f08.g1)
ACCAG478621AG478622
length764760
length of high quality
(start - end)
453 (62 - 514)359 (72 - 430)
definitionCHROMAT_FILE: MSMg01no372_f08.b1 PHD_FILE: MSMg01no372_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:03 2005CHROMAT_FILE: MSMg01no372_f08.g1 PHD_FILE: MSMg01no372_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,628,935 - 127,629,387)(127,469,906 - 127,470,118)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGCCATCTCAGTCCAAGAATGTGCAGAGAAGACGTCTGCATTTCCTCTGC
AGAGACATATAGCCATGTTTCATGGTAACTTCACCTCTGAGAAATTCCAG
AAATTTCAAGAAATCTTAAGTACTGAGTCTGAGCTGAGACTAATACCAAA
AGTTTAAAAAGAAAAGCCGCCAAGGCCCTCGGGCTGAAGCATGTCATGAG
CATGACGTTAACCTAATTCACAGTGTGCCTAAGGAGGCCACCGGGCCACA
TTCTGGTTATTTTCCCAGTCCCTGGATGTGTAATTGGTATAGACCCACTC
CATCATGAGCAAGACCCTCTCACTGTTCCAAAACTATGCAAGAAGAGTCA
TTATGGGAATAAAAACTAGTTGTTATGGCCCCTTTTCTACAGAGATGATG
AACTGTGAACAATACTGGACCCCTGAAGGGATGGAGGACATTGGTGCCCA
ACCCCAAACCTGAAAGAAGGACAGGCAAGATGGGCCCACTGGTACCATAG
CTGCATACAGAGGCATTACTGCCTTCTGATTGGCTCTGAGGGCTGTTCAA
CAGAGGGAATTCTTAACTTGGGGGGGAAATTTGGCAGAAACCATGTCTGG
GGAGTCGTAAGCCCTAAGGGGAGGTCTCCACCCTAATTATATAAAAAAAG
GGGGGGAAATTTCCATTAGATGAATGGGCCGGGGAAAAAAAAAAAACCTC
TCCCACTTTGATGT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGTCCAAAGGTCTGCAATGCAAGCACTC
TCACCCACTAACCCATCTTTCCAGGGTCCCTGTGGTTAAATGTAAGACAG
TTTCCCAAAATTTGAATTTAACTTAGATGAATCTAATAAAGCACGATTGG
TGCATGAATAAACAAATGTTAAAGTTGAATTGATATTCAAGCTCTCCTTT
ACCTTCTTACACACACACACAAAATCTCTGAATGGATCACAGGGCCCCCA
ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGAGATCTGCAACCCT
GTAGGTACAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTC
TAGCTGCATATGCATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAG
AGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCA
GGGCCAAAAAAGGGGAGTGGGTAGGTAGGTTGAGAGGGGNTNNNNTTNNT
TTTTNNNNTNTNTGNTTNNTNTTTGTGNTTTTGTTTTTTTTTGTGNGNNN
GNGTTGTTTGTTTTTTTTGGTGTGGTTTCGTGTTTGGGNGGTTGGTTTTT
GTTTGGTTTTTTTTTTTTTTTTTTTNTGTNGTTNNTGTTTTTTTTGTGTT
TTTTGTTGTTTGTGTNTNGNTGGTTTCTTTTTGCCTTTTTTTTTTTTTTT
TTTTCCGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_f08.b1 MSMg01no372_f08.b1 CHROMAT_FILE:
MSMg01no372_f08.b1 PHD_FILE: MSMg01no372_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:03 2005
         (453 letters)



>mm_chr1_127628735_127629587
          Length = 853

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaagaatgtgcagagaagacgtctgcatttcctctgcagagacatatagccatgtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tccaagaatgtgcagagaagacgtctgcatttcctctgcagagacatatagccatgtttc 594

                                                                       
Query: 61  atggtaacttcacctctgagaaattccagaaatttcaagaaatcttaagtactgagtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atggtaacttcacctctgagaaattccagaaatttcaagaaatcttaagtactgagtctg 534

                                                                       
Query: 121 agctgagactaataccaaaagtttaaaaagaaaagccgccaaggccctcgggctgaagca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 533 agctgagactaataccaaaagtttaaaaagaaaagccgacaaggccctcgggctgaagca 474

                                                                       
Query: 181 tgtcatgagcatgacgttaacctaattcacagtgtgcctaaggaggccaccgggccacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtcatgagcatgacgttaacctaattcacagtgtgcctaaggaggccaccgggccacat 414

                                                                       
Query: 241 tctggttattttcccagtccctggatgtgtaattggtatagacccactccatcatgagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tctggttattttcccagtccctggatgtgtaattggtatagacccactccatcatgagca 354

                                                                       
Query: 301 agaccctctcactgttccaaaactatgcaagaagagtcattatgggaataaaaactagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agaccctctcactgttccaaaactatgcaagaagagtcattatgggaataaaaactagtt 294

                                                                       
Query: 361 gttatggccccttttctacagagatgatgaactgtgaacaatactggacccctgaaggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gttatggccccttttctacagagatgatgaactgtgaacaatactggacccctgaaggga 234

                                            
Query: 421 tggaggacattggtgcccaaccccaaacctgaa 453
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tggaggacattggtgcccaaccccaaacctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no372_f08.g1 MSMg01no372_f08.g1 CHROMAT_FILE:
MSMg01no372_f08.g1 PHD_FILE: MSMg01no372_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:03 2005
         (359 letters)



>mm_chr1_127469706_127470464
          Length = 759

 Score =  397 bits (205), Expect = e-115
 Identities = 211/213 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtccaaaggtctgcaatgcaagcactctcacccactaacccatctttccagggtccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtccaaaggtctgcaatgcaagcactctcacccactaacccatctttccagggtccct 260

                                                                       
Query: 61  gtggttaaatgtaagacagtttcccaaaatttgaatttaacttagatgaatctaataaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gtggttaaatgtaagacagtttcccaaaatttgaatttaacttagatgaatccaataaag 320

                                                                       
Query: 121 cacgattggtgcatgaataaacaaatgttaaagttgaattgatattcaagctctccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgattggtgcatgaataaacaaatgttaaagttgaattgatattcaagctctccttta 380

                                            
Query: 181 ccttcttacacacacacacaaaatctctgaatg 213
           ||||||| |||||||||||||||||||||||||
Sbjct: 381 ccttcttccacacacacacaaaatctctgaatg 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)