BAC Information

Click to search

BAC

Clone NameMSMg01-372I07
Chromosome1 (Build37)
Map Location 101,785,934 - 101,786,192
singlet/doubletsinglet
Overlap geneC230078M14Rik
Upstream geneLOC633295
Downstream geneEG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372I07.T7 (MSMg01no372_i07.b1)MSMg01-372I07.TJ (MSMg01no372_i07.g1)
ACCAG478763AG478764
length732757
length of high quality
(start - end)
480 (65 - 544)279 (70 - 348)
definitionCHROMAT_FILE: MSMg01no372_i07.b1 PHD_FILE: MSMg01no372_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:17 2005CHROMAT_FILE: MSMg01no372_i07.g1 PHD_FILE: MSMg01no372_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGACGATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTAGGATTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACTGGTGAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT
CAACAGAGGAATGGATACAGGAAATGTGGTACATATACCCAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTGACACTTTCACAAAGGAACT
CTCATAACATATACTCACTGATAAGTGGATATTAGCCCCTAAACTAGGAT
ACTCACGATTTAAGTACACATTTGTTAAACTCTTGCACCTCAATGAAGAA
TGAAGACTGTATCGCGGATCCTATGCCCCTCC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCCTTCTGCTCGGTTCAGCTTTTAGTGCTG
CATTTCATGTAATTAAAGGAAATAACGTCAAGGATGATTTCTTTTGGCCT
GTGGAATTCAACAATAATATGTGAGCTCCAAAAAGTATTTTAGGTTTAGT
CTCTCTGTTTCTGTCTCTGTCTCTCTCTGTCTCTCTGTCTCTCTGCCTCT
GTCTCTCTCGCTTTCCCTCTACCCCCTCTCTGTTTGTGAGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGANTGNNTGTATGTANTTG
TNTTTGTTATGTATAGTNNGTGTGTGTGTGGGTTTGGTGGTTTTGGTTTT
TTTGTGTAGAAAATATAATTTTGTGTAATTGTTTTTTANTGTTAATTTTT
TATGTTGGTTTTTGTAGTNTATTTATTTTAATATAGTGTTGGATTATTTG
GTAATTTTTTTTATTATTTTGTGATAAAGGTGTTTTATTATTTTTGCCTA
TTAATTTTATTTTTTTATTTAATTATAAAATATTTTGGGAAATTTTAGTA
TTTTGTATTTTATTTTTAGTCTTTTATGGATTTTATATTTTTGTCAATTA
TTTTTTGAATTAATATATAATTAAAAGATTTTTTAAAATATTTTATTCTC
CCCCCCCTTTTCCTCACCTCTCCACTCCTTTCATTTCTTTTTTTCCCACC
TACTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_i07.g1 MSMg01no372_i07.g1 CHROMAT_FILE:
MSMg01no372_i07.g1 PHD_FILE: MSMg01no372_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:17 2005
         (279 letters)



>mm_chr1_101785866_101786544
          Length = 679

 Score =  447 bits (231), Expect = e-130
 Identities = 252/259 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   tccttctgctcggttcagcttttagtgctgcatttcatgtaattaaaggaaataacgtca 61
           ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 327 tccttctgctctgttcagcttttagtactgcatttcatgtaattaaaggaaataacttca 268

                                                                       
Query: 62  aggatgatttcttttggcctgtggaattcaacaataatatgtgagctccaaaaagtattt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aggatgatttcttttggcctgtggaattcaacaataatatgtgagctccaaaaagtattt 208

                                                                       
Query: 122 taggtttagtctctctgtttctgtctctgtctctctctgtctctctgtctctctgcctct 181
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 taggttcagtctctctgtttctgtctctgtctctctctgtctctctgtctctctgcctct 148

                                                                       
Query: 182 gtctctctcgctttccctctaccccctctctgtttgtgagtgtgtgtgtgtgtgtgtgtg 241
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gtctctctctctttccctctaccccctctctgtttgtgagtgtgtgtgtgtgtgtgtgtg 88

                              
Query: 242 tgtgtgtgtgtgtgtatgt 260
           |||||||||| || |||||
Sbjct: 87  tgtgtgtgtgagtatatgt 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)