BAC Information

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BAC

Clone NameMSMg01-372J17
Chromosome1 (Build37)
Map Location 91,046,628 - 91,047,095
singlet/doubletsinglet
Overlap geneSh3bp4
Upstream geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
Downstream geneLOC383542, EG665688, Centg2, Gbx2, Asb18, Iqca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372J17.T7 (MSMg01no372_j17.b1)MSMg01-372J17.TJ (MSMg01no372_j17.g1)
ACCAG478831AG478832
length751775
length of high quality
(start - end)		527 (59 - 585)352 (68 - 419)
definitionCHROMAT_FILE: MSMg01no372_j17.b1 PHD_FILE: MSMg01no372_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:23 2005CHROMAT_FILE: MSMg01no372_j17.g1 PHD_FILE: MSMg01no372_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATC
TGTTCACCCATATCATACTCACAGTCAAGAGCAGAGAGAAACAAATACAC
CCATCCTGTCTGCTTCTTGCTTTCAGTTTTATACAGTTTCAGGGCCCCAA
GCCTAGGGAATGGCACTGCCCACAGTGGGTTTGGTCTTCATACATCAATC
ATCAATCAAGACAATTCCCCATAGACATGACCACAGGACAACCTGACCTA
AATATTTCTTCAATTGAAACTCTTTTTGCAAGCAATTTTAGGTTGTGGTA
AGGTGACTTTAAAATTCATCACAAGTTGAACTGCAGACAGCTGCGAGGTC
AAGGGACACGCTGTGTCTCTGTAAGATGTACAGTAACAGTTGGGCACAGG
CTATGTGGATGCTAACTTGTTCTACAAGCTCTTAGGAAAATAGGTAAACT
AGTACTTGGGCTCGTGTTAGTGTGTTTGCTACTGAGATGCTCCAGTCTGA
ATGGAAAAGCTCTCCTGCATATACAAGATGGACCTACGTCTTCACCCAGT
TAACTATATAGCCAGCAGCTTATTCTCTGTGACCTCCTGGTCTGCAGGAT
AAAGCGTGTTTTTCTTCATGAACCATTCTGAGAGTCCTTGCCACTTCTGG
TCTCTTGAAAATCAACCTCCCTGGTAATCTGGGCAAATCAGTCATCTTTT
CCTGCTGGAAAAACATGCCTTCTTGAATTTTTTCCTAAAATCTTTACTCC
T

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCTGTACCAAAGAATGGATACAAAAAAATGT
GGTTCATTTACACAATGGAATAATACTAAGTTATTAAAAACCAAGGACAT
CGAGAATTTTGCAGGCAAATGGATGGAACTAGAAAGTATCATTATGAGTG
AGGTAACCCACACTCAAAAGGACACGCATGGTTTGTACTTACTTATAGGT
GCATCCTAGTCATAAAATACAGGATACACACGCTGTACTCCACAGACCCA
AGGACGTTAAACAAGAGGGGAGTTCCAAGGGAGGATGCTTGAATCTCACT
TAGAAGGGGGAATAAAATAGTTGTAGGAGGCAGATGGAGGGAGAGAACAG
GGTGGGAGAGGGGGTAGGTAGTNTTNNNNNNTTTNNNTTTTTTTTTTTTT
TTTTTTTNTTTTTTNNTTTTTTTTCCTTTTTTCCCCCCTCCCCCTTTTCT
CTCCTCTCTTTTCCCCCCCCTCTCTTTTTCTCTTTCTTTTCCCCCTTTCC
CCCCTTTTTTTCCCCCCCCCCTTTCTTCTCCTTTTTCCCCCCTTTCTTCT
TTCCCTCCCCTTCCCCCCTTCCCTTCCCTTTTTCTCTTCCTCCCCTTTCT
TCCTTTTTTCCCCCCCCTTTTCCTTTTGCGCCTCTTCTTTCCTTCCCTTT
TTTTTTTCTTTTTTCTTTCCCCTTTTTTTTCCCCCCCCCCTCCTTTTTTT
TCCTTTCCCCCTCCTATTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_j17.b1 MSMg01no372_j17.b1 CHROMAT_FILE:
MSMg01no372_j17.b1 PHD_FILE: MSMg01no372_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:23 2005
         (527 letters)



>mm_chr1_91046163_91047095
          Length = 933

 Score =  770 bits (398), Expect = 0.0
 Identities = 449/470 (95%), Gaps = 10/470 (2%)
 Strand = Plus / Minus

                                                                       
Query: 66  cagttttatacagtttcagggccccaagcctagggaatggcactgcccacagtgggtttg 125
           |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct: 933 cagttttatacagtttcagggccccatgcccagggaatggcactgcccacagtgggcttg 874

                                                                       
Query: 126 gtcttcatacatcaatcatcaatcaagacaattccccatagacatgaccacaggacaacc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 873 gtcttcatacatcaatcatcaatcaagacaattccccatagacatgaccacagaacaacc 814

                                                                       
Query: 186 tgacctaaatatttcttcaattgaaactctttttgcaagcaattttaggttgtggtaagg 245
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tgacctaaataattcttcaattgaaactctttttgcaagcaattttaggttgtggtaagg 754

                                                                       
Query: 246 tgactttaaaattcatcacaagttgaactgcagacagctgcgaggtcaagggacacgctg 305
           |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 753 tgactttaaaattcatcacaagttaaactgcagacagctgggaggtcaagggacacgctg 694

                                                                       
Query: 306 tgtctctgtaag-----atgtacagtaacagttgggcacaggctatgtggatgctaactt 360
           ||||||||||||     ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 693 tgtctctgtaagatattatgtacagtaacagttgggcacaggatatgtggatgctaactt 634

                                                                       
Query: 361 gttctacaagctcttaggaaaataggtaaactagtacttgggctcgtgttagtgtgtttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gttctacaagctcttaggaaaataggtaaactagtacttgggctcgtgttagtgtgtttg 574

                                                                       
Query: 421 ctactgagatg--ctccagtctgaatggaaaagctctcctgcat-atacaagatggacct 477
           || ||||||||  |||  |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 573 ctcctgagatgttctc--gtctgaatggaaaagctctcctgcatgatacaagatggacct 516

                                                             
Query: 478 acgtcttcacccagttaactatatagccagcagcttattctctgtgacct 527
           ||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 515 acgtcttcacccagttaactatacagccagcagcttagtctctgtgacct 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 933
Length adjustment: 10
Effective length of query: 517
Effective length of database: 923
Effective search space:   477191
Effective search space used:   477191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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