Query= MSMg01no372_k20.b1 MSMg01no372_k20.b1 CHROMAT_FILE:
MSMg01no372_k20.b1 PHD_FILE: MSMg01no372_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:28 2005
(466 letters)
>mm_chr1_78728008_78728873
Length = 866
Score = 803 bits (415), Expect = 0.0
Identities = 455/469 (97%), Gaps = 4/469 (0%)
Strand = Plus / Plus
Query: 1 cttaactactgtatgactacttttgcattacagtacctatccctgaactctacatgtgac 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 cttaactactgtatgactacttttgcattaaagtacctatccctgaactctacatgtgac 260
Query: 61 cacttttacatagttgcatattttacatagttgtcatgtgactcttactgaagactccca 120
|||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 cactttaacttaggtgcatattttacatagttgtcatgtgactcttaccgaagactccca 320
Query: 121 gcatgaccctctgggccgagatccttcaggaaatcctttccttctgacgtccttcacaat 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gcatgaccctctgggccgagatccttcaggaaatcctttccttctgacctccttcacaat 380
Query: 181 tgctttctttccagtctccatgtaaatgaaatcatgcagggtgtgctctgcgatgcttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctttctttccagtctccatgtaaatgaaatcatgcagggtgtgctctgcgatgcttaa 440
Query: 241 tttctttcattgcatcatatatctgtgagattcacccaagttaggtatatcagtcacttg 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctttcattgcatcgtatatctgtgagattcacccaagttaggtatatcagtcacttg 500
Query: 301 cttctttaaggaaaagatttatttttatttatatgtatgggtgtttgcttatatgtatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttctttaaggaaaagatttatttttatttatatgtatgggtgtttgcttatatgtatgt 560
Query: 361 atgtatatgtgtatgtatatata--ccatatgtgtgcttgatgtccaaggaggccagaag 418
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtatatgtgtatgtatatatataccatatgtgtgcttgatgtccaaggaggccagaag 620
Query: 419 agggtgctggga-ctcctagaactggagttatacatggcatttatgtca 466
|||||||||| | | |||||||||||||||||||||| ||||||||||
Sbjct: 621 agggtgctgg-atcccctagaactggagttatacatgatatttatgtca 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_k20.g1 MSMg01no372_k20.g1 CHROMAT_FILE:
MSMg01no372_k20.g1 PHD_FILE: MSMg01no372_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:28 2005
(471 letters)
>mm_chr1_78892470_78893340
Length = 871
Score = 799 bits (413), Expect = 0.0
Identities = 425/429 (99%)
Strand = Plus / Minus
Query: 1 attcatatgaaagtctttggaaataaagggtatggcaaaaacactccatcagaccctcta 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 429 attcatatgaaagtctttggaaataaagggtatggcagaaacactccatcagaccctcta 370
Query: 61 gccactcctgtactcatgtctttctccaggtacctgcaggtatatacttacctgctaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gccactcctgtactcatgtctttctccaggtacctgcaggtatatacttacctgctaaaa 310
Query: 121 gctccgtgaagaatccctgatgaagcactaaagatcagccaatttcaggaaagttctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gctccgtgaagaatccctgatgaagcactaaagatcagccaatttcaggaaagttctagg 250
Query: 181 ttaactggcaaagtggataccaaacaaatactcacaaaaatcatggtttgggccaactgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttaactggcaaagtggataccaaacaaatactcacaaaaatcatggtttgggccaactgt 190
Query: 241 gagtggctctatctgagctgcaaaaagaagttggctaagcataagtcagggaataaacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gagtggctctatctgagctgcaaaaagaagttggctaagcataagtcagggaataaacaa 130
Query: 301 ctgagcaagacaacaacttgtattcctcatggtttctgttttgagatcattccctgtttg 360
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 129 ctgagcaagacaacaacttgtattccgcatggtttctgttttgagattattccctgtttg 70
Query: 361 acttcctctcctgacttcctcaacaatgggctgtgactcattagaagattaaataaattc 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 69 acttcctctcctgacttcctcaacaatgggctgtgactcattagaagagtaaataaattc 10
Query: 421 cttcctcct 429
|||||||||
Sbjct: 9 cttcctcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
