Query= MSMg01no372_l08.b1 MSMg01no372_l08.b1 CHROMAT_FILE:
MSMg01no372_l08.b1 PHD_FILE: MSMg01no372_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:31 2005
(498 letters)
>mm_chr1_104064879_104065776
Length = 898
Score = 920 bits (476), Expect = 0.0
Identities = 489/494 (98%), Gaps = 2/494 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgtcctgtttgctatggcaaaactagccatcacggggcctataggaaaatttc 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 207 gaattcatgtcctgtttgctatggcaaaactagccattacggggcctataggaaaatttc 266
Query: 65 ctacagccactttcttaagccagtgtaatatctgactgtattctgaatacttatcttcgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctacagccactttcttaagccagtgtaatatctgactgtattctgaatacttatcttcgt 326
Query: 125 gcctacagataggttcagctctcagccatcctcaaaaaggagtcttttttggaggaggca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gcctacagataggttcagctctcagccatcctcaaaaaggagtcttttttggaggaggca 386
Query: 185 gagaccattacagaagccatgattgatgaaagtgctggaccaaccgaccatgggattcct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 387 gagaccattacagaagccatgattgatgaaagtgctggaccaaccgaccatgggatgcct 446
Query: 245 gcctacaactaatatattaataacacaattccaattccacccaaggttcaagaaactttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcctacaactaatatattaataacacaattccaattccacccaaggttcaagaaactttg 506
Query: 305 cagatgagtaaaagtattataagatccaggcaacaaaattaaaaaaaaaaaatctgctgt 364
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 507 cagatgagtaaaagtattataagatccaggcaacaaaatttaaaaaaaaa--tctgctgt 564
Query: 365 gagatggttttccagaaactaaagaaagagaaaaattttctgaaaagaaagagaaaagtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagatggttttccagaaactaaagaaagagaaaaattttctgaaaagaaagagaaaagtt 624
Query: 425 taaaaataggagtttggtttagggataagaagtaatctgataaaattcaggggatggaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaaaataggagtttggtttagggataagaagtaatctgataaaattcaggggatggaat 684
Query: 485 gagaggtaaatgta 498
||||||||||||||
Sbjct: 685 gagaggtaaatgta 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_l08.g1 MSMg01no372_l08.g1 CHROMAT_FILE:
MSMg01no372_l08.g1 PHD_FILE: MSMg01no372_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:31 2005
(464 letters)
>mm_chr1_104304717_104305580
Length = 864
Score = 797 bits (412), Expect = 0.0
Identities = 424/428 (99%)
Strand = Plus / Minus
Query: 1 ctttccagtacgtccatatgagctgagccactatgaggtttggtgattctggatcctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctttccagtacgtccatatgagctgagccactatgaggtttggtgattctggatcctttt 369
Query: 61 tcaaatccttatctagtgttgcttatatgtttgggaaaccatgaataagaaggtaacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcaaatccttatctagtgttgcttatatgtttgggaaaccatgaataagaaggtaacact 309
Query: 121 gaaccctgtcatatagtccgcaccaagaaaaaattataagtgaatcacagatttatatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaaccctgtcatatagtccgcaccaagaaaaaattataagtgaatcacagatttatatat 249
Query: 181 taaaaagtggtattaatgaatgttcttgaaaaaataagacttgttcttaataaactagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 248 taaaaagtggtattaatgaatgttcttgaaaaaataagacttgttcttaataaaccagaa 189
Query: 241 aaaagatactagcaaagattcaaatacagaaatagtaaaataaaatagctgaacacactt 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 188 aaaagatactagcaaagattcaaatacagaaatagaaaaataaaatagctgaacatactt 129
Query: 301 ataataaaatgaatgaaaataaaaatataataagatatcaaatagaaaacaaacaatatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ataataaaatgaatgaaaataaaaatataataagatatcaaatagaaaacaaacaatatc 69
Query: 361 acaaaatattaatacaaagtctcaaattttatagatgtgacagaggtagaaaatcaccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 acaaaatattaatacaaagtctcaaattttatagatgtgacagaggtagaaaatcaccta 9
Query: 421 tagaagaa 428
||| ||||
Sbjct: 8 taggagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
