Query= MSMg01no372_l11.b1 MSMg01no372_l11.b1 CHROMAT_FILE:
MSMg01no372_l11.b1 PHD_FILE: MSMg01no372_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:31 2005
(529 letters)
>mm_chr1_95532694_95533622
Length = 929
Score = 992 bits (513), Expect = 0.0
Identities = 522/525 (99%)
Strand = Plus / Minus
Query: 5 gaattcttgttgctcttccagaggaccagaatttagttctagcacccatgccattcagca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 gaattcttgttgctcttccagaggaccagaatttagttctagcacccatgccattcagca 816
Query: 65 tatgaccctctgcaactccagatccaggccttttcagatctcagtaggttcctgttcaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tatgaccctctgcaactccagatccaggccttttcagatctcagtaggttcctgttcaca 756
Query: 125 tttaacatacacatatatgtacataaataagtcttaatagagttggccttgcctaatttt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tttaacatacacatatatgtacataaataagtcttaatagagttggccttgcctaatttc 696
Query: 185 agacttttctataggagggataggtaggctgaaggccatcctacagatgatctttttcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 agacttttctataggagggataggtaggctgaaggccatcctacagatgatctttttcag 636
Query: 245 gggcaataaaaatatttgcccctattgttgatgccttggggcgggggaggggaggaaacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gggcaataaaaatatttgcccctattgttgatgccttggggcgggggaggggaggaaacc 576
Query: 305 aaggtgcttcaggatccagggcaggcctgtttgctggaagtctattttcttctggggaaa 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 575 aaggtgcttcaggatccagggcagggctgtttgctggaagtctattttcttctggggaaa 516
Query: 365 aacacagcaaagaaaacctaatcaacatgtagtaaaatttggcggttaaagaatctgatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aacacagcaaagaaaacctaatcaacatgtagtaaaatttggcggttaaagaatctgatg 456
Query: 425 caaggtcttgcatgcaaggtttaaggttccaggatggtgcccaggaagaaaatccaccag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caaggtcttgcatgcaaggtttaaggttccaggatggtgcccaggaagaaaatccaccag 396
Query: 485 agaacagaaactacaagcctttatgagttggggagtagggacatt 529
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 395 agaacagaaacaacaagcctttatgagttggggagtagggacatt 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_l11.g1 MSMg01no372_l11.g1 CHROMAT_FILE:
MSMg01no372_l11.g1 PHD_FILE: MSMg01no372_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:31 2005
(500 letters)
>mm_chr1_95342523_95343422
Length = 900
Score = 905 bits (468), Expect = 0.0
Identities = 494/506 (97%), Gaps = 10/506 (1%)
Strand = Plus / Plus
Query: 1 ctacctctcccatactcagttgg-acagagcagaacctctgccctcagaatgcttcctcc 59
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctacctctcccatactcagttgggacagagcagaacctctgccctcagaatgcttcctcc 258
Query: 60 tttgaaaggactagttctgccctgttgcgtttattgacaactacttgaagaatttgtaca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttgaaaggactagttctgccctgttgcgtttattgacaactacttgaagaatttgtaca 318
Query: 120 caatcattattttgaacctctcctgaggtgacatgagcacacttctgacctatactgag- 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 caatcattattttgaacctctcctgaggtgacatgagcacacttctgacctatactg-ga 377
Query: 179 cagtcagga----cagtgatatgcatcagcacagaataggctagtaaccaacagcagatg 234
|||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cagt---gatatgcagtgatatgcatcagcacagaataggctagtaaccaacagcagatg 434
Query: 235 cccccttcttcttttccccacttctgacaacttttcactgtgtagatttgtctcagcttc 294
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cccccaccttcttttccccacttctgacaacttttcactgtgtagatttgtctcagcttc 494
Query: 295 cttctctagtgtttggattacaagtgtgagccaccaggtctggataatatgtgcctttct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cttctctagtgtttggattacaagtgtgagccaccaggtctggataatatgtgcctttct 554
Query: 355 tgtgggacaatggtatgtggaagggctgaagaggccttctgtagttgtcattctaaggct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtgggacaatggtatgtggaagggctgaagaggccttctgtagttgtcattctaaggct 614
Query: 415 tacaagcatttgcagcagtgaacaaaataagcaatcagacttagtatgtacttagaaggt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tacaagcatttgcagcagtgaacaaaataagcaatcagacttagtatgtacttagaaggt 674
Query: 475 agcagcacggtgatgggctcttgatt 500
||||||||||||||||||||||||||
Sbjct: 675 agcagcacggtgatgggctcttgatt 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
