BAC Information

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BAC

Clone NameMSMg01-372N07
Chromosome1 (Build37)
Map Location 176,921,278 - 177,086,024
singlet/doubletdoublet
Overlap geneRgs7
Upstream geneIfi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372N07.T7 (MSMg01no372_n07.b1)MSMg01-372N07.TJ (MSMg01no372_n07.g1)
ACCAG479003AG479004
length782780
length of high quality
(start - end)		410 (42 - 451)442 (70 - 511)
definitionCHROMAT_FILE: MSMg01no372_n07.b1 PHD_FILE: MSMg01no372_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:40 2005CHROMAT_FILE: MSMg01no372_n07.g1 PHD_FILE: MSMg01no372_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,921,278 - 176,921,683)(177,085,583 - 177,086,024)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCAATTTCCTATCACCAAAGTATGTGATGACTTCAATAATAGAACATGT
AGTTATAGTGTCGCTCACCATGTTGTTATATAGCGTATAACCAAGGGCAG
TGACTATAGAGTATGTTGTTTTAGAGACCTCTAGAGCCTCCTTGACCAAC
AAGGCATTAGGAGGTATCACACAGCCAGCCTGGACTACAATTGCAAGAGT
AAACAGGAATTAACTGAGGGAAAGAAAACTTACCTCAATGGCATCTGCTG
GTAGCATGTACTGTAGCTATTGGGGACTGAGACAGGACCATAGCTTGAGC
CTTCCAGTCCAAGGCCAGCATGGGAGACTCTAAAAGACATGAGCATTAAA
AGAGAAGAAGAGAAGGAAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGA
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTNNNNNNNNNNNNNNNNNNNNNTNNNNTTNNNTNNNNNTNNNNNNN
NTNNNTNNTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNTTTTTTTTTT
TTTTTTNTTTTCCTNTTTTTTTTTGTTTTTTTTTNNTNNTNTNTTTTTTT
TTTNNTTTTTTTTTTNTTNTTTTTTTTTTTTN

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCTTTTATATATGCCACTAATTATCACC
TCCGAGTTTGAGGTGAGAGAGGGCTGAGTACCTGAGTTTGGCACAGCTGC
TACCAGCTCTTCACATGGTGACAATCTGGGGATGTCTTTCTCAGTGCACA
CATCACTTGGATATCCAAATGGGTGAAAAAAAAAAAACTACAATGTTTTG
GTTGGTGTGTTCTTGCACTTGAGCTGTGTGGGGGAGGCAAATATCACTCA
TACATGAAGATTAATTAGTGATTAGTTTGCTGAGCAGCTGGAGGATGCTA
AGCCATCTGCTGTGCCATTGTTGGGAGGGCAATCTTGACTGAACACTTAT
TAAACTTTTCTAATACTCCACTTACACATTGCCACTGCTCTCCCAGGATC
TTGTTAAGTTGAGGTGATGATAGAATTTTAGGAGCAGTTGCATCATGGAA
GCATGTAGCTCTGTGATTACCATTAAGTAAAGAAATAAATCTTGAGACCA
TGCCTTCTAACACTAAGATCTCTTAGTAGCATCTATGCCTGTAATATCCA
CATAAGCTTTTCTCCCCTACACAACATCTCATATTAAATCCTCGAAGAAA
AATTTTGAAAAAACAAATGGAGCATTACATTTGAATTAAATTCCCGGACA
AACCTTTTTTTAATCAAACCAAAACATTTTTGGATCTTACCATGGTGAAA
AGGTTTTTCCCATTGGGGAAGGCGGGGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_n07.b1 MSMg01no372_n07.b1 CHROMAT_FILE:
MSMg01no372_n07.b1 PHD_FILE: MSMg01no372_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:40 2005
         (410 letters)



>mm_chr1_176921074_176921883
          Length = 810

 Score =  785 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccaatttcctatcaccaaagtatgtgatgacttcaataatagaacatgtagtta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccaatttcctatcaccaaagtatgtgatgacttcaataatagaacatgtagtta 264

                                                                       
Query: 65  tagtgtcgctcaccatgttgttatatagcgtataaccaagggcagtgactatagagtatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtgtcgctcaccatgttgttatatagcgtataaccaagggcagtgactatagagtatg 324

                                                                       
Query: 125 ttgttttagagacctctagagcctccttgaccaacaaggcattaggaggtatcacacagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgttttagagacctctagagcctccttgaccaacaaggcattaggaggtatcacacagc 384

                                                                       
Query: 185 cagcctggactacaattgcaagagtaaacaggaattaactgagggaaagaaaacttacct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagcctggactacaattgcaagagtaaacaggaattaactgagggaaagaaaacttacct 444

                                                                       
Query: 245 caatggcatctgctggtagcatgtactgtagctattggggactgagacaggaccatagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caatggcatctgctggtagcatgtactgtagctattggggactgagacaggaccatagct 504

                                                                       
Query: 305 tgagccttccagtccaaggccagcatgggagactctaaaagacatgagcattaaaagaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgagccttccagtccaaggccagcatgggagactctaaaagacatgagcattaaaagaga 564

                                                         
Query: 365 agaagagaaggaaggaaggaaggaagggagggagggagggagggag 410
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaagagaaggaaggaaggaaggaagggagggagggagggagggag 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_n07.g1 MSMg01no372_n07.g1 CHROMAT_FILE:
MSMg01no372_n07.g1 PHD_FILE: MSMg01no372_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:40 2005
         (442 letters)



>mm_chr1_177085383_177086224
          Length = 842

 Score =  855 bits (442), Expect = 0.0
 Identities = 442/442 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcttttatatatgccactaattatcacctccgagtttgaggtgagagagggctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tctgcttttatatatgccactaattatcacctccgagtttgaggtgagagagggctgagt 583

                                                                       
Query: 61  acctgagtttggcacagctgctaccagctcttcacatggtgacaatctggggatgtcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acctgagtttggcacagctgctaccagctcttcacatggtgacaatctggggatgtcttt 523

                                                                       
Query: 121 ctcagtgcacacatcacttggatatccaaatgggtgaaaaaaaaaaaactacaatgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctcagtgcacacatcacttggatatccaaatgggtgaaaaaaaaaaaactacaatgtttt 463

                                                                       
Query: 181 ggttggtgtgttcttgcacttgagctgtgtgggggaggcaaatatcactcatacatgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggttggtgtgttcttgcacttgagctgtgtgggggaggcaaatatcactcatacatgaag 403

                                                                       
Query: 241 attaattagtgattagtttgctgagcagctggaggatgctaagccatctgctgtgccatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 attaattagtgattagtttgctgagcagctggaggatgctaagccatctgctgtgccatt 343

                                                                       
Query: 301 gttgggagggcaatcttgactgaacacttattaaacttttctaatactccacttacacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gttgggagggcaatcttgactgaacacttattaaacttttctaatactccacttacacat 283

                                                                       
Query: 361 tgccactgctctcccaggatcttgttaagttgaggtgatgatagaattttaggagcagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgccactgctctcccaggatcttgttaagttgaggtgatgatagaattttaggagcagtt 223

                                 
Query: 421 gcatcatggaagcatgtagctc 442
           ||||||||||||||||||||||
Sbjct: 222 gcatcatggaagcatgtagctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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