BAC Information

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BAC

Clone NameMSMg01-372N09
Chromosome1 (Build37)
Map Location 55,418,281 - 55,418,690
singlet/doubletsinglet
Overlap geneBoll
Upstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793
Downstream geneEG632964, LOC667237, LOC626009, 9130227L01Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372N09.T7 (MSMg01no372_n09.b1)MSMg01-372N09.TJ (MSMg01no372_n09.g1)
ACCAG479007AG479008
length746761
length of high quality
(start - end)
411 (66 - 476)468 (70 - 537)
definitionCHROMAT_FILE: MSMg01no372_n09.b1 PHD_FILE: MSMg01no372_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:40 2005CHROMAT_FILE: MSMg01no372_n09.g1 PHD_FILE: MSMg01no372_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAAAATTCTCAAGCCCATTTTGTATAAATTGTGTTCTTAACACCTGAGAG
GCCCCATGGTGTACTTTCTTCCTTTGACCAATGACTTCACAGACAACTCA
ATTACAGATGTGTGTCTGTGCTCTATAGAATGAGTTCCCAGACAGCCAAG
GCTACATAGAGAAACCCTGTCTTGTAAAAAACAAAACAACAAAAAAACCC
AAAACAAATTGGTATATATCCATTATGTTTATACTTCTAACTTAGAAGGC
TGAACATATCAATATCATTGCCAATTTATTTCTAGTATAGAATTTGTTAA
ATAATGAAGTCTTCACAAAATTCTGTAAAACAAAGGAGTTCAATGGAAGT
ACTAGTTTGTTTTCAAGTTTAAGTAAGAAGACTCCATTTTCCTGTGAGAG
GTGGATGAAATCAGTCCCAAGTGAAGATACCTCAAACACTGATAAAATGA
TTTTAAAACACACCAAATCACTTCAGTCCCTGTTTTTAAGGCTCCAGTGT
GGATGTTATGGCTTTCTTTCTTATTTTCTAAGATACCTCCTATTTACCTG
CCAATATATTACCATGCTGTAATACTCCTGAATACAGGACGCTTGCCTAT
TTTTTTTTTAACTTTCCGCGTTATGGATAACCGAAACCTCCCCTATTCAG
TGTTAATCGCCTATTTATTTGTTGCCTGTAAAAAACCTTTTTTTCT
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTGTTTTTTAAAAACATTTTCTCTAAAG
TATCTTTGTCAGAATTAGCCAACAGTACATCATCCATGTAATGATAAATA
ATAGATTGAGGGAATTGCCTACAAGTTATTTCTAGGTATTGTTGCTCACA
ATACCGACATAAAGTTGGACTATTTAACATTCAAAAAAAAAAAGAACATC
AAACTTCAGGTCTCCACGTGAACATGGGGTTCATGAGTACTGCACACACA
CATGTAAACATATTGATAGAGAAGGAAAAAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTCCCCAGGACCCTA
ATGTGACATTACTTTATGCCCTAGCAGCTGCAGTTTTCCTAACATGTGTC
TTCTGAGTCTCTTGGATATAATGCATCAAAGCATTGCTGATTTGATGTTG
TTTTCTTTTCTCTAAAGTACTTCCATACTTTCTGGCATTAGCAAATATAC
AAGCTCACTTGTATGTTTCCTGATCAGTCTTAGAATCACTCCTTTCTCTA
AGAAACTCTGGTTCAATTTATTGGAGAAAAATTAAAAACCACGATCCTGA
CCCTGGTTGTTTTTTCACCCCTGGAACGCCTTCCCTTGTTTTTAGTGTCT
CCCACCCGAACGAGGAAGGGACAAACACTATTGTGCTTATTTCACTTCTT
ATCTATTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_n09.b1 MSMg01no372_n09.b1 CHROMAT_FILE:
MSMg01no372_n09.b1 PHD_FILE: MSMg01no372_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:40 2005
         (411 letters)



>mm_chr1_55418079_55418890
          Length = 812

 Score =  731 bits (378), Expect = 0.0
 Identities = 403/412 (97%), Gaps = 3/412 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttgtataaattgtgttcttaacacctgagaggccccatggtgtactttcttccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cattttgtataaattgtgttcttaacacctgagaggccccatggtgtactttcttccttt 262

                                                                       
Query: 61  gaccaatgacttcacagacaactcaattacagatgtgtgtctgtgctctatagaatgagt 120
           ||||||||||||||||||||||||||||||| |  ||||||||||  |||||||||||||
Sbjct: 263 gaccaatgacttcacagacaactcaattacaaa--tgtgtctgtgggctatagaatgagt 320

                                                                       
Query: 121 tcccagacagccaaggctacatagagaaaccctgtcttgtaaaaaacaaaacaacaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccagacagccaaggctacatagagaaaccctgtcttgtaaaaaacaaaacaacaaaaa 380

                                                                       
Query: 181 aacccaaaacaaattggtatatatccattatgtttatacttctaacttagaaggctgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 aacccaaaacaaattggtatatatccattatgtttatacttctaatttagaaggctgaac 440

                                                                       
Query: 241 atatcaatatcattgccaatttatttctagtatagaatttgttaaataatgaagtcttca 300
           |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 atatcaatatcagtgccaatttatttctagtatagaatttgttaaataatgatgtcttca 500

                                                                       
Query: 301 caaaattctgtaaaa-caaaggagttcaatggaagtactagtttgttttcaagtttaagt 359
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaattctgtaaaaacaaaggagttcaatggaagtactagtttgttttcaagtttaagt 560

                                                               
Query: 360 aagaagactccattttcctgtgagaggtggatgaaatcagtcccaagtgaag 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaagactccattttcctgtgagaggtggatgaaatcagtcccaagtgaag 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space:   322806
Effective search space used:   322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)