BAC Information

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BAC

Clone NameMSMg01-372P02
Chromosome1 (Build37)
Map Location 23,456,616 - 23,457,125
singlet/doubletsinglet
Overlap genenone
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1
Downstream geneLOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372P02.T7 (MSMg01no372_p02.b1)MSMg01-372P02.TJ (MSMg01no372_p02.g1)
ACCAG479089AG479090
length751747
length of high quality
(start - end)
492 (41 - 532)510 (72 - 581)
definitionCHROMAT_FILE: MSMg01no372_p02.b1 PHD_FILE: MSMg01no372_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:48 2005CHROMAT_FILE: MSMg01no372_p02.g1 PHD_FILE: MSMg01no372_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTTTGTCTCTGAGCCCCATTTTTAATTGGGTTATTTGATTTTCTGA
GGTCCACCTTCTTGATTCTTTATATATGCTGGATATTAGTCCCCTATCTG
ATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCAATTCTTGATCTTATAGCACAAGCCATTGCTGTTCTATTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAG
ATTTGACCTTACCACAAGGAGATAAGTATGAATCGATTCCCATTCTTCTA
CATGATTACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTT
CTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAAG
TGTGTGGGTTCATTTCTGGGTCTTCCATTCTATTCCATTGGTCTACGCGC
CTGCTTCTATACCAGCACCATGTCGTCTTTTTTCCCCATTGCTCCGTACT
AAAGCTTTACGTCCGGTCTGGTTGATCCGCTATTAGGGTTCCTTTTCCCT
TTGCTAAGATCCCTCTTTTTTCCCCACGCTTTTCTGTTAATCCCTTATGA
A
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAGATACTCTCTTAACAGCTGTAAAGGG
AAGACAGGCTACAGACAATAACTAGCAACTTAATTAAACATTAAAGTGGG
ATCCACATTAGGAACTCCCTGTAACAGGTAAAATCTAATGAAACAAGGAG
TTCCTTGTTTGTAGTGAAGTTGTGGTGAACATGTAGTCCAACTTTTGTGT
ACCTGACATGGAAATATAAATGGGCAAATTTACCTTTAAAGACTTTCAGC
AATAAATATTGATCATTATAAACTAAGATTCAGTAGCTCTAATATTTAAT
TCTGAGTCATAAACCCTCAGAATTGTAAATTAAGCATAAATGAAAGATAT
GTTCTAGGAAGGAAATGGCCAGAACTTGACCAGCACAGAGACTAACCTCC
ACTCTCAATAGATAAGACTACATTAAATGTAAAAGTCTTTCTGCACAATA
ATGAAAGGTACCACCAGTGGAAACCAACGTGAAAACATTTTTACCAGGTA
CATTTCAGTTGCAGGGCTGGTATCCAGAATTCACAACCAAATGTAAAAAT
TAAATATAATAATAATAATAACNATAATAATAACCGTACTAAGAGTAGTA
ATAGTAATAAAACAACCTCAGTTTATAAAGGGCAACGAAATGAACAGACA
GTTTTCCATAAAAAGAGATACCCATCCCCAAAAATATTTTCTAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_p02.g1 MSMg01no372_p02.g1 CHROMAT_FILE:
MSMg01no372_p02.g1 PHD_FILE: MSMg01no372_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:48 2005
         (510 letters)



>mm_chr1_23456416_23457325
          Length = 910

 Score =  940 bits (486), Expect = 0.0
 Identities = 504/510 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatactctcttaacagctgtaaagggaagacaggctacagacaataactagcaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagatactctcttaacagctgtaaagggaagacaggctacagacaataactagcaactt 260

                                                                       
Query: 61  aattaaacattaaagtgggatccacattaggaactccctgtaacaggtaaaatctaatga 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aattaaacattaaagtgggatccacatcaggaactccctgtaacaggtaaaatctaatga 320

                                                                       
Query: 121 aacaaggagttccttgtttgtagtgaagttgtggtgaacatgtagtccaacttttgtgta 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 aacaaggagttccttgtttgtagtgaagttgtgatgaacatgtagtccaacttttgtgta 380

                                                                       
Query: 181 cctgacatggaaatataaatgggcaaatttacctttaaagactttcagcaataaatattg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cctgacatggaaatataaatgggcaaatttacctttgaagactttcagcaataaatattg 440

                                                                       
Query: 241 atcattataaactaagattcagtagctctaatatttaattctgagtcataaaccctcaga 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcattataagctaagattcagtagctctaatatttaattctgagtcataaaccctcaga 500

                                                                       
Query: 301 attgtaaattaagcataaatgaaagatatgttctaggaaggaaatggccagaacttgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtaaattaagcataaatgaaagatatgttctaggaaggaaatggccagaacttgacc 560

                                                                       
Query: 361 agcacagagactaacctccactctcaatagataagactacattaaatgtaaaagtctttc 420
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 561 agcacagagactaacctccactctcaatagaaaagactacattaaatttaaaagtctttc 620

                                                                       
Query: 421 tgcacaataatgaaaggtaccaccagtggaaaccaacgtgaaaacatttttaccaggtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcacaataatgaaaggtaccaccagtggaaaccaacgtgaaaacatttttaccaggtac 680

                                         
Query: 481 atttcagttgcagggctggtatccagaatt 510
           ||||||||||||||||||||||||||||||
Sbjct: 681 atttcagttgcagggctggtatccagaatt 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)