Query= MSMg01no373_j13.b1 MSMg01no373_j13.b1 CHROMAT_FILE:
MSMg01no373_j13.b1 PHD_FILE: MSMg01no373_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:35 2005
(535 letters)
>mm_chr1_88247723_88248657
Length = 935
Score = 855 bits (442), Expect = 0.0
Identities = 505/546 (92%), Gaps = 34/546 (6%)
Strand = Plus / Plus
Query: 1 cactactatgccttcttaccctttggaagaaccagtttcccgatcagtgactattcttgc 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactactacgccttcttaccctttggaagaaccagtttcccgatcagtgactattcttgc 260
Query: 61 acgaacagagccctcaaatgattcttttaaggtctcttcagtggtatcctcagacagacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgaacagagccctcaaatgattcttttaaggtctcttcagtggtatcctcagacagacc 320
Query: 121 tttgacaaacagagttttggatggttctggaagagaaaaattcctgtttcactatgaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgacaaacagagttttggatggttctggaagagaaaaattcctgtttcactatgaacc 380
Query: 181 cttggtgaatactgcca--------cattcagctgaagtagattactttttaaaaaaaaa 232
||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 381 cttggtgaatactgccatactgccacattcagctgaagtagattcctttttaaaaaaaaa 440
Query: 233 a---ttttttttacgtgcattattgttttgtctgcaatctatgtcagatcttaagagtta 289
| |||||| | |||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 441 aaaattttttat--gtgcattagtgttttgtctgcaatctatgtcagagcttaagagtta 498
Query: 290 cagacagggttgggcagtggtggcgcacacctttaatcccagcacctaggaggcagaggc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagacagggttgggcagtggtggcgcacacctttaatcccagcacctaggaggcagaggc 558
Query: 350 aggcagatttctgagtttgaggccagcctggtctacaaagtgagttccacgacaggcagg 409
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 559 aggcagatttctgagtttgaggccagcctggtctacagagtgagttccacggcaggcagg 618
Query: 410 actacacagagaaatcctgtctcgataaaccaaaaaagttacaagataggtgccatgtga 469
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 619 actacacagagaaatcctgtctcgata---------------------ggtgccatgtga 657
Query: 470 gtgctgggatttgaacccaggtcctctcagtgctcaaccactgagccttcccttacactg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gtgctgggatttgaacccaggtcctctcagtgctcaaccactgagccttcccttacactg 717
Query: 530 attttg 535
||||||
Sbjct: 718 attttg 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_j13.g1 MSMg01no373_j13.g1 CHROMAT_FILE:
MSMg01no373_j13.g1 PHD_FILE: MSMg01no373_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:35 2005
(336 letters)
>mm_chr1_88411763_88412498
Length = 736
Score = 588 bits (304), Expect = e-172
Identities = 328/336 (97%)
Strand = Plus / Minus
Query: 1 tggaccagtgaaggttccccagtctttttttttttttttttttctgggttttcgagacag 60
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 713 tggaccagtgaagtttccccagtctttttttttttttttttttctgatttttcgagacag 654
Query: 61 ggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggctggccttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggctggccttga 594
Query: 121 actcagaaatctacctgcctctgcctcccgagtgctgggatttaaaggtgtgggccaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 actcagaaatctacctgcctctgcctcccgagtgctgggatttaaaggtgtgggccaaga 534
Query: 181 ctttaggttccccagtcttcaactgtcaacaagccacagaagcttggggacaccggggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctttaggttccccagtcttcaactgtcaacaagccacagaagcttggggacaccggggca 474
Query: 241 ttcattatttcctgtggccatttcctgggggtagggatatcaacctgaatagtcaacagc 300
| || || | |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 473 tccagtagtccctgtggccatttcctgggggtggggatatcaacctgaatagtcaacagc 414
Query: 301 tagacccaggcaacccttcagaggacccaaaagtag 336
||||||||||||||||||||||||||||||||||||
Sbjct: 413 tagacccaggcaacccttcagaggacccaaaagtag 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
