Query= MSMg01no373_l01.b1 MSMg01no373_l01.b1 CHROMAT_FILE:
MSMg01no373_l01.b1 PHD_FILE: MSMg01no373_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:42 2005
(368 letters)
>mm_chr1_83270712_83271479
Length = 768
Score = 629 bits (325), Expect = 0.0
Identities = 348/357 (97%), Gaps = 8/357 (2%)
Strand = Plus / Minus
Query: 13 ggaattcagtaatgattttattctataaacaacttttttcatttgaaaatagctatttta 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ggaattcagtaatgattttattctataaacaacttttttcatttgaaaatagctatttta 697
Query: 73 aataaactttagttttagattttgagattaattgtttttgtttaatcaatggagttaatt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aataaactttagttttagattttgagattaattgtttttgtttaatcaatggagttaatt 637
Query: 133 ttctttcctttttttcttttacttttttctttttcttttttttgtttttttttgtttttt 192
||||||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||
Sbjct: 636 ttctttcctttttttcttttacttttttctttt--ttttgttt-tttttttttg--tttt 582
Query: 193 gttttttttgttttgcatcttattctaagaatctctattgagactctatgtccaacaaat 252
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 g-tttttttgttttgcatcttattctaagaatctctattgagactctatgtccaacaaat 523
Query: 253 gccagctctttcgatgcatagcataactgttccatggtctatagtgtctctggaattctg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gccagctctttcgatgcatagcataactgttccatggtctatagtgtctctggaattctg 463
Query: 313 gcatctagacagt-gcttttccaggagattgtactgtaagcaggaataaactttgaa 368
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gcatctagaca-tcgcttttccaggagattgtactgtaagcaggaataaactttgaa 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_l01.g1 MSMg01no373_l01.g1 CHROMAT_FILE:
MSMg01no373_l01.g1 PHD_FILE: MSMg01no373_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:42 2005
(455 letters)
>mm_chr1_83098413_83099267
Length = 855
Score = 857 bits (443), Expect = 0.0
Identities = 452/455 (99%)
Strand = Plus / Plus
Query: 1 acagtgggaaattcctacagaaacttttaagctctcattacagctccattaacaatgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtgggaaattcctacagaaacttttaagctctcattacagctccattaacaatgaga 260
Query: 61 atcctattacagggaagggttgttgaagagcagccaaatccccagcttcctcaagcagtt 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctattacagggaagggttgttggagagcagccaaatccccagcttcctcaagcagtt 320
Query: 121 gaagtggtgatctgaaatcatcaggagcgatcgcttttataacatccaagaacaaatcat 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtggtgatcagaaatcatcaggagcgatcgcttttataacatccaagaacaaatcat 380
Query: 181 tttgaccacaagacattgaacttgaacacaaaatgaaagcataatgataggtttttaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgaccacaagacattgaacttgaacacaaaatgaaagcataatgataggtttttaata 440
Query: 241 acgtgggcagcttttgctgtgtagagaattttgcaccatttacctataaaagcactctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgtgggcagcttttgctgtgtagagaattttgcaccatttacctataaaagcactctac 500
Query: 301 ccccacttaatttctttttctatagaaatgtcacatttcactcctgagatcaaaggcagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccacttaatttctttttctatagaaatgtcacatttcactcctgagatcaaaggcagg 560
Query: 361 agaaaggtggtgactccttcatatctgggcaaaactggagtctaaagactggtttctcct 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaaggtggtgaatccttcatatctgggcaaaactggagtctaaagactggtttctcct 620
Query: 421 ttagtgtctatcactattttctatttcttttaaag 455
|||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagtgtctatcactattttctatttcttttaaag 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
