XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCTGCGT
GGTTCACTTAAAAAACAAAAAACAAACAAAAAAAAACGAAAAAAAAAAAA
AACCCTTACTTTTCACCTTAGATCAAAAGAGAGCATTTGCTTTGCCATTA
TTGTGTTGGGAATAAACCCTAGGAAAGGCAGGAACTTTCATGCTTCTTAA
TCTTTAAAATGCTTAGATTGGCATTCAAAATAGTGGGTTTCATCCTGACA
CTTGATGCACGTAGTGTATCATACTTCTGTCTCCCAGAGTTTCATCACGA
CTTCTCTCCCCATTTTCCCAGCTCTCACTGACTTTTTTCATTCTTTCCAC
AGAAAAATATCTCCTCGTGTTATCACATAGATTCTGTTTGCATAACTTTT
TCCTTACTCCCTTTCCATGTGTTATTCCTCATCCTCATTACTCACTTTAT
AGTTAACACACACACACATCTGTAAAGATTTTGTAGGTCCTATTTATGAG
AAAATATACAATATTTGTCTTTGTAAATCTGATTTATTTCACTCAACATA
ATTATTTTTATGTTGTATCTAATTTCCTGAAATATTATGATTTCAATTCT
CTATCAAAAAATAAATTTCTTTATCCATGCATTTGATGTCAGAGCAGTTA
CCATATCCTGACTGTTGTGAATAAACATTAATGCGTTTGAATAGAAGACC
TGGGAATAGAGCCACAGTACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACTTCAATTCCATTGATCAATATGTTTGGGTATTTTTTTTTT
GCCAGTACCATGGTGTTATTACTATCATTCTGTAGTAAGATTGAAATAAG
GGACACTCATACCTCCAGAAATTCTTTTATTATACAGGGTATAATAAAAG
CTAAAGCTATCCTGGGTTTGTTTTGTTTAGTTCTGTTCTGTTTTGTTTCT
CCATATGAACTTAAGTATTGATCTTTCAAAGTCAGTAAGAATTATGATGA
AATTATGATTAGGATTGTATTGAATCTGTAGATTGTTTTTGATAAGGTGG
ACAGTTTTACTTTGTTAATCTTACTGATGCATGAGCATAGCAGATCATCC
AGTCTTCTGACATCTCATTTTCTTTCTTCAAATACTTGAAATTTTTTTGT
AAAAATATTTCACTTGCTTGGTTAGGATTGTCCAATTTATTTCATATACT
TTGTGAGTATTGTGAACTGTGTTGTTTTCATGGTTTCTTCTTCAGTACAT
TGTTTCTATACAGTAAGCCTACTGATTTCTTTTTATTTTTTAATTAATTG
TATATTCAGACATTTAGCTGAAGGAATTTAGGGGCCATTTATGCATACTA
TTGTATCATTTGCAAATAATGAAACTTTGACTTTCTCATTTCCAATTTTT
AATCCCTTGATN

Query= MSMg01no373_l14.b1 MSMg01no373_l14.b1 CHROMAT_FILE:
MSMg01no373_l14.b1 PHD_FILE: MSMg01no373_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:44 2005
         (605 letters)



>mm_chr1_98278600_98279602
          Length = 1003

 Score = 1081 bits (559), Expect = 0.0
 Identities = 591/607 (97%), Gaps = 12/607 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctgcgtggttcacttaaaaaacaaa----aaacaaacaaaaaaaaacgaaa---- 58
           ||||||||||||| ||||||||||||||||    |||||||||||||||||  |||    
Sbjct: 712 gaattctgcgtggatcacttaaaaaacaaaaaacaaacaaacaaaaaaaaa--aaaaccg 655

                                                                       
Query: 59  aaaaaaaaaaacccttacttttcaccttagatcaaaagagagcatttgctttgccattat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaaaaaaaaaacccttacttttcaccttagatcaaaagagagcatttgctttgccattat 595

                                                                       
Query: 119 tgtgttgggaataaaccctaggaaaggcaggaactttcatgcttcttaatctttaaaatg 178
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 594 tgtgttgggaataaaccctaggaaaggcaggagctttcatgcttcttaatctttaaaatg 535

                                                                       
Query: 179 cttagattggcattcaaaatagtgggtttcatcctgacacttgatgcacgtagtgtatca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 534 cttagattggcattcaaaatagtgggtttcatcctgacacttgatgcacttagtgtatca 475

                                                                       
Query: 239 tacttctgtctcccagagtttcatcacgacttctctccccattttcccagctctcactga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tacttctgtctcccagagtttcatcacgacttctctccccattttcccagctctcactga 415

                                                                       
Query: 299 cttttttcattctttccacagaaaaatatctcctcgtgttatcacatagattctgtttgc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cttttttcattctttccacagaaaaatatctcctcgtgttatcacatagattctgtttgc 355

                                                                       
Query: 359 ataactttttccttactccctttccatgtgttattcctcatcctcattactcactttata 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ataactttttccttactccctttccatgtgttattcctcatcctcattactcactttata 295

                                                                       
Query: 419 gttaacacacacacacatctgtaaagattttgtaggtcctatttatgagaaaatatacaa 478
           || |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtcaacacacacacac--ctgtaaagattttgtaggtcctatttatgagaaaatatacaa 237

                                                                       
Query: 479 tatttgtctttgtaaatctgatttatttcactcaacataattatttttatgttgtatcta 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tatttgtctttgtaaatctgatttatttcactcaacataattatttttatgttgtatcta 177

                                                                       
Query: 539 atttcctgaaatattatgatttcaattctctatcaaaaaataaatttctttatccatgca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 atttcctgaaatattatgatttcaattctctatcaaaaaataaatttctttatccatgca 117

                  
Query: 599 tttgatg 605
           |||||||
Sbjct: 116 tttgatg 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1003
Length adjustment: 10
Effective length of query: 595
Effective length of database: 993
Effective search space:   590835
Effective search space used:   590835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)