BAC Information

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BAC

Clone NameMSMg01-373L20
Chromosome1 (Build37)
Map Location 91,056,825 - 91,234,027
singlet/doubletdoublet
Overlap geneLOC383542
Upstream geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
Downstream geneEG665688, Centg2, Gbx2, Asb18, Iqca, Cxcr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373L20.T7 (MSMg01no373_l20.b1)MSMg01-373L20.TJ (MSMg01no373_l20.g1)
ACCAG479698AG479699
length728746
length of high quality
(start - end)
562 (19 - 580)461 (59 - 519)
definitionCHROMAT_FILE: MSMg01no373_l20.b1 PHD_FILE: MSMg01no373_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:45 2005CHROMAT_FILE: MSMg01no373_l20.g1 PHD_FILE: MSMg01no373_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,233,504 - 91,234,027)(91,056,825 - 91,057,285)
sequence
CTACCTATATTCAGAGGATCCGCGGAATTCATAGCCACTACGCCTCAAGG
TCTCCATGCCAAGATCCAGGTCAGAAACTTGCATCTCCAAGCCTGAAAAT
CAGGATCACAGGTGAGCCTTCCAATTCTGGATTGAAATTCACTCCAGATG
TAATCAAGTCAGCAACCAGGAATAGCCACTACAGACATGATCAAAACCAA
CCAATGAACCAACCAACCAACCAACCAACCAACCAACCAACCAACCAACC
AACCAACCAAACAGCACTGCAAGTCACAGGAGACCCTGAGTGTACAAGAG
CCCCAGTCTGTGACTTGGGGTTTAGAATCATATGCTGTCAAAGAGACAAG
GTGTCTGTGCTGATGAACCCCAAGGATGATGTATGTCCCAGGGTGGACCT
GTCTGGGCACTGCTCCTACATCATGGCTCACTGTTTTGCAGCAGATTGCT
GGCTGTTTTTTTTTTTTTTCCCTGTGTTAACCTGCTGCCAGGATGTCCTT
AAAGCTGGTTAAGAAATTCTTCTAGCCTGAGAACTGTGGCTAACAAATCC
CTGCTGCTCTCAAGGTGGCAGTAGGTACTGTACTTCATACCCCTGATGGT
GACAGGCAAAGAAAGAATAATCACATGGGGAACATTTTTGTCTGATCAGC
CATTACGCTGCTCTATCACAGGGCTGGGTCCTGCATCGAAAAAGCCTCTT
GGTCTTGGAATTGGCCTCCCTGAAACCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCATTCCATGTGTGGCTCCAAGAACACACATGTGTATGTGT
GTATATGTATGTGCATATATGTTTGTATATGTAAACATATACATGTATGT
GTGCATATGTGTGTTACTGTAGGCATGGATGTGCACATGTGTTTCCAGGG
TGTACTCACCTTTGCCTGCAAGTGGAGTCCTCAAGTCTAGAGCCTCTCGC
TCTCTATCATACCTGTAATGGCTATTCCTGGTTGTCAACTTGACTATATC
TGGAATGATTTACAATCCAGAATTGGAGAGCTCACCTGTGAGCCAGATCT
TGAGGCTGGAAGACACAAGTTTCTGACCTGGATCTTGACATGGAGATCTA
GAGGCATAGTGGCCATGAAAAGCTTAGACCCAGGCAAGGTAGTACATGTC
TTTAATCCTAGGAGACTGAGACAAGGAGATCTCTGAGTTCAAGGTCAGCC
TGGGATAAAGCAAGTCTCAGATCCAGGCATGGTGGTACACATCTTTAATT
TGGGCCACACCTTCTGCTGGAGACTTACATAATGACATTGGGAAGAAGGA
AGAATTGCTCTTCTTTTGCCCGCTTGCATTTACTTGCCAAAACATTCGTT
TTTAATTTACTGCCACTGAACACCACCCTAAAAAAAACTAGGCTCTTTTG
ATATTAAGCCCCAACTAAAATTCTTTGGACTGTCCCTCTCCCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_l20.b1 MSMg01no373_l20.b1 CHROMAT_FILE:
MSMg01no373_l20.b1 PHD_FILE: MSMg01no373_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:45 2005
         (562 letters)



>mm_chr1_91233062_91234027
          Length = 966

 Score =  944 bits (488), Expect = 0.0
 Identities = 518/540 (95%), Gaps = 20/540 (3%)
 Strand = Plus / Minus

                                                                       
Query: 27  tcaaggtctccatgccaagatccaggtcagaaacttgcatctccaagcctgaaaatcagg 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tcaaggtctccatgccaagatccaggtcagaaacttgcatctccaagcctgaaaatcagg 907

                                                                       
Query: 87  atcacaggtgagccttccaattctggattgaaattcactccagatgtaatcaagtcagca 146
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 906 atcacaggtgagccttccaattctggattaaaattcactccagatgtaatcaagtcagca 847

                                                                       
Query: 147 accaggaatagccactacagacatgatcaaaaccaaccaatgaaccaaccaaccaaccaa 206
           ||||||||||||||||||||||||||||||||||||||||||                ||
Sbjct: 846 accaggaatagccactacagacatgatcaaaaccaaccaatg----------------aa 803

                                                                       
Query: 207 ccaaccaaccaaccaaccaaccaaccaaccaaccaaacagcactgcaagtcacaggagac 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ccaaccaaccaaccaaccaaccaaccaaccaaccaaacagcactgcaagtcacaggagac 743

                                                                       
Query: 267 cctgagtgtacaagagccccagtctgtgacttggggtttagaatcatatgctgtcaaaga 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cctgagtgtacaagagccccagtctgtgacttggggtttagaatcatatgctgtcaaaga 683

                                                                       
Query: 327 gacaaggtgtctgtgctgatgaaccccaaggatgatgtatgtcccagggtggacctgtct 386
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 682 gacaaggtgtctgtgctgatgaatcccaaggatgatgtatgtcccagggtggacctgtct 623

                                                                       
Query: 387 gggcactgctcctacatcatggctcactgttttgcagcagattgctggctgttttttttt 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gggcactgctcctacatcatggctcactgttttgcagcagattgctggctgttttttttt 563

                                                                       
Query: 447 ttttt----ccctgtgttaacctgctgccaggatgtccttaaagctggttaagaaattct 502
           |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttttttttgccctgtgttaacctgctgccaggatgtccttaaagctggttaagaaattct 503

                                                                       
Query: 503 tctagcctgagaactgtggctaacaaatccctgctgctctcaaggtggcagtaggtactg 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctagcctgagaactgtggctaacaaatccctgctgctctcaaggtggcagtaggtactg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 966
Length adjustment: 10
Effective length of query: 552
Effective length of database: 956
Effective search space:   527712
Effective search space used:   527712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no373_l20.g1 MSMg01no373_l20.g1 CHROMAT_FILE:
MSMg01no373_l20.g1 PHD_FILE: MSMg01no373_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:46 2005
         (461 letters)



>mm_chr1_91056625_91057485
          Length = 861

 Score =  775 bits (401), Expect = 0.0
 Identities = 446/461 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccattccatgtgtggctccaagaacacacatgtgtatgtgtgtatatgtatgtgcatat 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tccattccatgtgtggctccaagaatacacatgtgtatgtgtgtatatgtatgtgcatat 260

                                                                       
Query: 61  atgtttgtatatgtaaacatatacatgtatgtgtgcatatgtgtgttactgtaggcatgg 120
           ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtttgtagatgtaaacatatgtatgtatgtgtgcatatgtgtgttactgtaggcatgg 320

                                                                       
Query: 121 atgtgcacatgtgtttccagggtgtactcacctttgcctgcaagtggagtcctcaagtct 180
           ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 321 atgtgcacatgtgtttctagggtgtattcacctttgcctacaagtggagtcctcaagtct 380

                                                                       
Query: 181 agagcctctcgctctctatcatacctgtaatggctattcctggttgtcaacttgactata 240
           ||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 381 agagcctttcgctctctatcatacttgtaatggctattcctggttgtcagcttgactata 440

                                                                       
Query: 241 tctggaatgatttacaatccagaattggagagctcacctgtgagccagatcttgaggctg 300
           ||||||| ||  |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tctggaacgaactacaatccagaattggagggctcacctgtgagccagatcttgaggctg 500

                                                                       
Query: 301 gaagacacaagtttctgacctggatcttgacatggagatctagaggcatagtggccatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagacacaagtttctgacctggatcttgacatggagatctagaggcatagtggccatga 560

                                                                       
Query: 361 aaagcttagacccaggcaaggtagtacatgtctttaatcctaggagactgagacaaggag 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 aaagcttagacccaggcaaggtagtacatgcctttaatcctaggagactgagacaaggag 620

                                                    
Query: 421 atctctgagttcaaggtcagcctgggataaagcaagtctca 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctctgagttcaaggtcagcctgggataaagcaagtctca 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)