Query= MSMg01no373_l20.b1 MSMg01no373_l20.b1 CHROMAT_FILE:
MSMg01no373_l20.b1 PHD_FILE: MSMg01no373_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:45 2005
(562 letters)
>mm_chr1_91233062_91234027
Length = 966
Score = 944 bits (488), Expect = 0.0
Identities = 518/540 (95%), Gaps = 20/540 (3%)
Strand = Plus / Minus
Query: 27 tcaaggtctccatgccaagatccaggtcagaaacttgcatctccaagcctgaaaatcagg 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tcaaggtctccatgccaagatccaggtcagaaacttgcatctccaagcctgaaaatcagg 907
Query: 87 atcacaggtgagccttccaattctggattgaaattcactccagatgtaatcaagtcagca 146
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 906 atcacaggtgagccttccaattctggattaaaattcactccagatgtaatcaagtcagca 847
Query: 147 accaggaatagccactacagacatgatcaaaaccaaccaatgaaccaaccaaccaaccaa 206
|||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 846 accaggaatagccactacagacatgatcaaaaccaaccaatg----------------aa 803
Query: 207 ccaaccaaccaaccaaccaaccaaccaaccaaccaaacagcactgcaagtcacaggagac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ccaaccaaccaaccaaccaaccaaccaaccaaccaaacagcactgcaagtcacaggagac 743
Query: 267 cctgagtgtacaagagccccagtctgtgacttggggtttagaatcatatgctgtcaaaga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cctgagtgtacaagagccccagtctgtgacttggggtttagaatcatatgctgtcaaaga 683
Query: 327 gacaaggtgtctgtgctgatgaaccccaaggatgatgtatgtcccagggtggacctgtct 386
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 682 gacaaggtgtctgtgctgatgaatcccaaggatgatgtatgtcccagggtggacctgtct 623
Query: 387 gggcactgctcctacatcatggctcactgttttgcagcagattgctggctgttttttttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gggcactgctcctacatcatggctcactgttttgcagcagattgctggctgttttttttt 563
Query: 447 ttttt----ccctgtgttaacctgctgccaggatgtccttaaagctggttaagaaattct 502
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttttttttgccctgtgttaacctgctgccaggatgtccttaaagctggttaagaaattct 503
Query: 503 tctagcctgagaactgtggctaacaaatccctgctgctctcaaggtggcagtaggtactg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctagcctgagaactgtggctaacaaatccctgctgctctcaaggtggcagtaggtactg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 966
Length adjustment: 10
Effective length of query: 552
Effective length of database: 956
Effective search space: 527712
Effective search space used: 527712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_l20.g1 MSMg01no373_l20.g1 CHROMAT_FILE:
MSMg01no373_l20.g1 PHD_FILE: MSMg01no373_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:46 2005
(461 letters)
>mm_chr1_91056625_91057485
Length = 861
Score = 775 bits (401), Expect = 0.0
Identities = 446/461 (96%)
Strand = Plus / Plus
Query: 1 tccattccatgtgtggctccaagaacacacatgtgtatgtgtgtatatgtatgtgcatat 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tccattccatgtgtggctccaagaatacacatgtgtatgtgtgtatatgtatgtgcatat 260
Query: 61 atgtttgtatatgtaaacatatacatgtatgtgtgcatatgtgtgttactgtaggcatgg 120
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtttgtagatgtaaacatatgtatgtatgtgtgcatatgtgtgttactgtaggcatgg 320
Query: 121 atgtgcacatgtgtttccagggtgtactcacctttgcctgcaagtggagtcctcaagtct 180
||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 321 atgtgcacatgtgtttctagggtgtattcacctttgcctacaagtggagtcctcaagtct 380
Query: 181 agagcctctcgctctctatcatacctgtaatggctattcctggttgtcaacttgactata 240
||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 381 agagcctttcgctctctatcatacttgtaatggctattcctggttgtcagcttgactata 440
Query: 241 tctggaatgatttacaatccagaattggagagctcacctgtgagccagatcttgaggctg 300
||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tctggaacgaactacaatccagaattggagggctcacctgtgagccagatcttgaggctg 500
Query: 301 gaagacacaagtttctgacctggatcttgacatggagatctagaggcatagtggccatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagacacaagtttctgacctggatcttgacatggagatctagaggcatagtggccatga 560
Query: 361 aaagcttagacccaggcaaggtagtacatgtctttaatcctaggagactgagacaaggag 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 aaagcttagacccaggcaaggtagtacatgcctttaatcctaggagactgagacaaggag 620
Query: 421 atctctgagttcaaggtcagcctgggataaagcaagtctca 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctctgagttcaaggtcagcctgggataaagcaagtctca 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|