Query= MSMg01no374_c07.b1 MSMg01no374_c07.b1 CHROMAT_FILE:
MSMg01no374_c07.b1 PHD_FILE: MSMg01no374_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:17 2005
(507 letters)
>mm_chr1_89659811_89660717
Length = 907
Score = 938 bits (485), Expect = 0.0
Identities = 497/501 (99%)
Strand = Plus / Plus
Query: 7 gaattcagagagctcctccctggggttggaattacaggcatgcatggccacgcccacttc 66
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagagagctcctgcctggggttggaattacaggcatgcatggccacgcccacttc 266
Query: 67 cttatgctgctgtttgcagcacctctcattttgcagcgtatcctaaatcccaaggagcag 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cttatgctgctgtttgcagcacctctcattttgcagcgtatcctaaatcccaaggagcag 326
Query: 127 ccccgtcagtgtggatgctttaattactgtccagccttcttcccttcttctgtccctttt 186
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ccctgtcagtgtggatgctttaattactgtccagccttcttcccttcttctgtccctttt 386
Query: 187 ttcagatcagaatcaccatgaatgagtacctagctcctgccaagaaccttttcttcagtt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttcagatcagaatcaccatgaatgagtacctagctcctgccaagaaccttttcttcagtt 446
Query: 247 gtagtcagccaaaattttgcagaatctctgaaataaactgaaaataaagagccagatcct 306
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 gtagtcagccaaaattttgcagaatctctgaaataaacggaaaataaagagccagatcct 506
Query: 307 gggacactagtccttcagcttctgggagcaggtagcctttgtcaaagtgcgtagtgacca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gggacactagtccttcagcttctgggagcaggtagcctttgtcaaagtgcgtagtgacca 566
Query: 367 cacctgaccagagctttcggtggttggtttttgtttgttttcccttgagctttggagaag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cacctgaccagagctttcggtggttggtttttgtttgttttcccttgagctttggagaag 626
Query: 427 agatctttgggactggcaggcattccttgaggagaaatgattacttctagatctgtttgg 486
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 627 agatctttgggactggcaggcattccttgaggagaaatgattacttctggatctgtttgg 686
Query: 487 gtttgagtccagatatttctc 507
|||||||||||||||||||||
Sbjct: 687 gtttgagtccagatatttctc 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_c07.g1 MSMg01no374_c07.g1 CHROMAT_FILE:
MSMg01no374_c07.g1 PHD_FILE: MSMg01no374_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:17 2005
(482 letters)
>mm_chr1_89818398_89819276
Length = 879
Score = 886 bits (458), Expect = 0.0
Identities = 475/482 (98%), Gaps = 3/482 (0%)
Strand = Plus / Minus
Query: 1 acagagatccacctgcctctctgtctcccaagcgttgggcttaaaagcacgcgccaccac 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 747 acagagatccacctgcctctctgtctcctaagcgttgggcttaaaagcacgcgccaccac 688
Query: 61 cgcctggcaggaaaaaagctgatctttactgacagacgtaaaaaccatgagcaggggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cgcctggcaggaaaaaagctgatctttactgacagacgtaaaaaccatgagcaggggatt 628
Query: 121 ggtttaaaacagcattccaataaggctgcccttgatgttactgtaaaatgaacactttct 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 627 ggtttaaaacagcattccaataaggctgcccttgacgttactgtaaaatgaacactttct 568
Query: 181 gtttacacacctgagcaagacaaggcaaggcaaggtcccatgtcacccggaatgtgaact 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 567 gtttacacacctgagcaagacaaggcaaggcaaggtcccatgtcacctggaatgtgaact 508
Query: 241 ggagcatccctgacaagtgcaatttggcactaaaaatttaaataaggggctcctcaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggagcatccctgacaagtgcaatttggcactaaaaatttaaataaggggctcctcaaaag 448
Query: 301 agaagaagattccataacgtgaacaggatttctgcaaggttgtcacagtcctcgagctcc 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ---agaagattccataatgtgaacaggatttctgcaaggttgtcacagtcctcgagctcc 391
Query: 361 tgcatgaggggaaaagtgctaactcaggtcctcccactacatcccatggaaaactgccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgcatgaggggaaaagtgctaactcaggtcctcccactacatcccatggaaaactgccac 331
Query: 421 tctgagctgttcctggagcagaatacggaaatccacacatactgctatttcaacagttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tctgagctgttcctggagcagaatacggaaatccacacatactgctatttcaacagttca 271
Query: 481 gt 482
||
Sbjct: 270 gt 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 879
Length adjustment: 10
Effective length of query: 472
Effective length of database: 869
Effective search space: 410168
Effective search space used: 410168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
