NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCGTGAATGTGTAAAGTCCTGGAAGAATTAGTGTTGTTGATC
TAGGCATGGCCATTTTACGAACTGCAAAGTCTCAGGCTCAAAGGGAAAGC
AAAGACTTCCTGGGTGGACATGGTGTGAATGTTAACAGTGTTTGCAGAAA
AGGTCTATCACAGCTATCTTCCCAGGGAGTTTGTGGTCTGAAAAGTAACC
CCCCTGCAGAGAATGATCCTAATATAATTAACTAAACCTGTCTATTTGAT
CCAGCTGTGTGTGATAAACTGTGCTTTTCTGTTTGTATATAAGCAGCAAC
CCATCCCCTGTTCTGCTGTATTCAATAACACCACCTTTCTGTGCAACTCT
ACATAATGAATATATTGAGCTCCCAAGTTGTTGAAGTCCCAGCCTACTTT
CTGTGTCCGTATATTCATCTTTTTCTCTGTCTCTCACTGTCATACTGAAG
CCAAGTCCCTGAAATAACACAAGGGAAAACAAAACAAAACCTTATAAAAA
GGTGTTTTGCTTTGCCCCATTTACAAGNCTCTGTATTCCAAAACTACTGG
NNACTGGGCANCTTNTATAAAGAAATCAGCCTGAAATTNTGAATGAAAAA
AAGTGGNACTTTANNNTCGAANATGNAAGTTATCTGAAAGNNNNNANNTA
NNTNTGTTNNCTAAGAANNNGNATNATNATANNNTAAAACANNCNCAGCA
ATNTNNACCAAACNNTNNNNTCNATNNNNNTGNTTNNNNNCTNTG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACTAACCTCTCTTCCTGCACTACTCTCAATTTGCTT
CTCTTGTCTGTGCTGTTCTCAGGAGTGTTGGGTGTACCCAAACTCTGACT
CATTCTGTCAAAATTTTCTCTGATTTGCCTGCCCCTCAAGAAGGCATCAC
TATCCAACATGTCTGTTTTCTACTACCAACTAATTTTACCTACATGTTTG
GGATTAAAGGTGTGAATTAAGGCCTTGCCTTTATTCCAGCCAGAGCAACC
ATGTTGCTGGATTAAAATTTCTCTATACTCTATGAACACAATTAATTTCG
GACATAGCTCAGATAAGTGAATATGATCGTTGAAATCAATAGACATTACT
CTTCCCTCCGAATAGGAGAACTNTAGCCTCATAAAACCCATACCGTAACC
TGCACAAGTTCATATTTCCTAACATGCTCGACCAAATCTGGACTATAAAA
ACTCCCAAACTGGTACACGTCGTAACACTTAACACTAATTATCGGATACC
GCACCAAGATGCCCCATCAGGAAAATCTTTTTGCAAGATGTCTTCACGTA
ACCAACTACACAAGTATTGGCGGTGGCCAAATACACTATGGGCCCCTTTT
ATTTACCTCTATATTCACTCCCAAACCCCCCCCGTTATTTTATCTTATCC
ACCTAACGTGCCTTCATTACGTCCTTTTTTCTTACCATCCTTTATCCCGT
AA

Query= MSMg01no374_e23.b1 MSMg01no374_e23.b1 CHROMAT_FILE:
MSMg01no374_e23.b1 PHD_FILE: MSMg01no374_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:30 2005
         (432 letters)



>mm_chr1_27345972_27346803
          Length = 832

 Score =  830 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcgtgaatgtgtaaagtcctggaagaattagtgttgttgatctaggcatggccat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcgtgaatgtgtaaagtcctggaagaattagtgttgttgatctaggcatggccat 263

                                                                       
Query: 64  tttacgaactgcaaagtctcaggctcaaagggaaagcaaagacttcctgggtggacatgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttacgaactgcaaagtctcaggctcaaagggaaagcaaagacttcctgggtggacatgg 323

                                                                       
Query: 124 tgtgaatgttaacagtgtttgcagaaaaggtctatcacagctatcttcccagggagtttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgaatgttaacagtgtttgcagaaaaggtctatcacagctatcttcccagggagtttg 383

                                                                       
Query: 184 tggtctgaaaagtaacccccctgcagagaatgatcctaatataattaactaaacctgtct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggtctgaaaagtaacccccctgcagagaatgatcctaatataattaactaaacctgtct 443

                                                                       
Query: 244 atttgatccagctgtgtgtgataaactgtgcttttctgtttgtatataagcagcaaccca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttgatccagctgtgtgtgataaactgtgcttttctgtttgtatataagcagcaaccca 503

                                                                       
Query: 304 tcccctgttctgctgtattcaataacaccacctttctgtgcaactctacataatgaatat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcccctgttctgctgtattcaataacaccacctttctgtgcaactctacataatgaatat 563

                                                                       
Query: 364 attgagctcccaagttgttgaagtcccagcctactttctgtgtccgtatattcatctttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attgagctcccaagttgttgaagtcccagcctactttctgtgtccgtatattcatctttt 623

                    
Query: 424 tctctgtct 432
           |||||||||
Sbjct: 624 tctctgtct 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)