BAC Information

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BAC

Clone NameMSMg01-374L13
Chromosome1 (Build37)
Map Location 79,592,233 - 79,592,549
singlet/doubletsinglet
Overlap genenone
Upstream geneAcsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
Downstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374L13.T7 (MSMg01no374_l13.b1)MSMg01-374L13.TJ (MSMg01no374_l13.g1)
ACCAG480448AG480449
length802749
length of high quality
(start - end)		94 (72 - 165)414 (56 - 469)
definitionCHROMAT_FILE: MSMg01no374_l13.b1 PHD_FILE: MSMg01no374_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:03 2005CHROMAT_FILE: MSMg01no374_l13.g1 PHD_FILE: MSMg01no374_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTATATTTGCGGCCGCTATTCGACTCCCTTATCGGAGACGATCCGCGG
AATTCCCGGCCCTTCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGACCTGCTGTCTGCNNCTCGCCCCTCCAGCGTGTG
ATTTCCCTTGTTGTTTGTCTGCCTGCCTGTCCTGCCATCTCTCTTTCTTT
TCTTTTTTTTTCCCCTCAGTTATTTTCCCGTCCTCCCGTTTGCATCCAGG
TCCTCTCACTCCTCGGCGCGGTTTCTCTTTCTGAGCTGTATCTGCTGCCT
TCTTGTCAATCTCTTTTTCTTTTCCCAATGAATCTTACCTTCTACCCTTC
CTTGCTTTTCTCTTCTCCCCCCGCTTCTTCTCCTTTATTCTGCCGATCTT
TCTCCTTCTTTCCTCTGTCTTCCTTGCTTTTGCTGCCTGTCTTTCTTTCT
TTCTTTCTTTCTTCCTTTCCCCCTTTCCTTTCTTTCTTCCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTCCCTCTTTCCTCCCTCCTTCCTTTCCTTCC
TCCCTTCCTTCCTCCTTCCTTTTCCTTCCCTCTTTTTTCTCCTTCTTTCT
CCTTCCCCCGCTTTTTTTTCTTCTCCCTCCTTCCCTTCCCCCTTCCTTCC
CTTTCTCCCCCCCCCTTCCCCTTTCTTTTTTTCTCTCCCCTCTCTCCCTC
TTCTTTCCATTTTCCTCCTTTTTTCCCTTTCTTTCTCTCTCCTTCCCCCC
TT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTCGGACAACCGGATCCTTCTACGGCAAAGCTTTTATTGCTTCA
ACATAAGGAAGACCCCAAACCCGGAAAATGGTGCTGCTTATATAGCCCGC
AGCGTGACGTTTCAGCACCTGATGTAGCGTGACAGCACCTGATTAGTTGC
TCGCCCATCACCCCATTATTACGCCCCGATATGGGCAGTGACTGGGCGTG
AATTTACTCTTGCACTTGTGCATAAGGGTTGTTTATTAGTTAGGTGCAGT
GGAAGCCAGCGCCATCTTATAATGGCGATTGCTCACGGCACGGCTCTCCA
CATCTGTGGTTGACTCTTAACCCCATACTCCACTTGTAGGTGGTTTTGAA
GCTATGCACCGAGGCATTTTCCATAGACATCACTACAAATCACATTGTGA
TTTTTTTTTTTTAATGCTTAGTTTCAGAGCACTGGCCAGGAATGAAATCA
GATATGCATTACATTTTGTTGATAGGCATCAGATTCAGTTTACATGGGTG
ACTCATTGCCCACTGCCAGTCTTTTCATTGAAGAATTTGAGAAAAGTCTT
TGAACCCGGTCCCTTGGCAATAATTTCCCCGAGGGGAACTATCCTTAGAA
AAAATTAGAATATCCTGGCTGGGGGCCTGAACCCAGAGGGGTTTTCGTTC
TTTTAAAAAACACCTTTCCCCCCCCCGCTGGTCTGGAAGAGCATTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_l13.g1 MSMg01no374_l13.g1 CHROMAT_FILE:
MSMg01no374_l13.g1 PHD_FILE: MSMg01no374_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:03 2005
         (414 letters)



>mm_chr1_79591736_79592549
          Length = 814

 Score =  574 bits (297), Expect = e-168
 Identities = 312/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 98  cgtgacgtttcagcacctgatgtagcgtgacagcacctgattagttgctcgcccatcacc 157
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 814 cgtgacgtttcagcacctgatgtggcgtgacagcacctgattagttgctcgcccatcacc 755

                                                                       
Query: 158 ccattattacgccccgatatgggcagtgactgggcgtgaatttactcttgcacttgtgca 217
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 754 ccattattacgccccgagatgggcagtgactgggcgtgaatttactcttgcacttgcgca 695

                                                                       
Query: 218 taagggttgtttattagttaggtgcagtggaagccagcgccatcttataatggcgattgc 277
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 694 taagggttgtttactagttaggcgcagtggaagccagcgccatcttataatggcgattgc 635

                                                                       
Query: 278 tcacggcacggctctccacatctgtggttgactcttaaccccatactccacttgtaggtg 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcacggcacggctctccacatctgtggttgactcttaaccccatactccacttgtaggtg 575

                                                                       
Query: 338 gttttgaagctatgcaccgaggcattttccatagacatcactacaaatcacattgtgatt 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gttttgaagctatgcaccgaggcattttccatagacatcactacaaatcacattgtgatt 515

                            
Query: 398 ttttttttttaatgctt 414
           |||||||||||||||||
Sbjct: 514 ttttttttttaatgctt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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