CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAAGAGAATCCGCGGA
ATTCAAGGCCATTCCCGGTCTATATAGCAAGTTCCAGAATAGTCAGGACT
ACACAACAAACAAACACAAAGAATATCAAAGTTATCTGTTACCAAAAAAA
TCTTGAGAGGGTCTTTTTTTTAAAGAACCTAAAATTTATAAGTAGTAACA
TATAAAAATATACAATAATTTTTATTTTAAACTTAAGGAGGCTGGCTATG
TATATGTGCTTGCTCGTGTGTATGTGCCTGGCATATGCCTGGGCAAGGAG
TCCAGTTGCTCTCCACCTTATGTTTTGATATGGGGTCTCTCACTGAACCC
GGATATCATTAGTTCAGCTAGATTAGCTGGCCAGTCATCTCCGGGGATCC
AACTGTCTATATTTCCCCAATTCTGGAGTTAAAAACACACACCACTACAC
CCTGGTTTCATGTGGAATCTGAAATGAACTCCCCATAAAATCTGAGTTGG
AACTAAATTATTTCACAGACGGTAAATTCAAATACTGCAGTTTCACATGC
GATGCACTGATCCCACTAGAAAATGCAGCAAATTAGTCAGAATTACAAAG
TGGCTAAGTGTCTAAACTATAATACTTTTGCTCTGAATTAATAAAGCAGC
GAAAATTGCTTACATCTCTGTTTTAGATAAATCTGTAGACTACATTTGCC
AGGTTTCTTCCCTAAAATTATCTCTCTCAGACATACCCCCCAAAATTTTT
CCCTCAATTCATTGACTATCCACTATATTTCAATTTGTCTCCCCTCTCCC
TTTTTTTGT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCAGGTTTCCATCCTTAGCTACAG
TCTGTCCAGATGACTAGAGTCACTCTCCTGCTGCAGTTTCCACCTGTGTC
CTTAGCTTCATGTGCCTCGCCTCTCCTTAGCTCCTCGGGTTCTAATGCTC
AGCCACGTCTCCTCTGCAACCCACCCTCCAATCGCCCTTTGCTCCTTCTT
TGGAACTTCCATTTTATATAACAGGCTCCATATGCCACAGACCTGGGGCT
TCAGCCTGCCTTTGTCTTATCTCTCACCTTCCAAATCCATCCCATCGTCA
GTCCTATGGATACTCACTTTAAGTTTATTCAAATTTTTCCTGCTCCAGTA
AGGTCCATCAAATATACCAAATAGGGTGTTGGTAATTTTTTAATGGTCAT
ATACGAGGAAGTATTGAAGGCTGCCACTCAGCTCCATGAAGATCCTTATA
GCAGAGGGGGAAAGAACAGGAGCTGTACCCCACAATGGACTGTTTCTGAA
AGTCCCCTCTCCCTAAATCCTGATAGATGTGAATTGCAACTGCTACTTGG
CACACATGTGTGGGAATTTTAAGCTTAATAGTCTTGTTATTCCGAATGGG
GTCATAAGGCACTTTTCTCATTCCTTGTCCTTTGTACCCCCAATCTACCC
ATATTCGTTGTACTATTACCTCTTTTTTGTTGTGTTGTCTCTCTCTGTAT
TTTTGCGTCTTTATTGTATTAACAATCTCATGTGTCTTTGT

Query= MSMg01no374_m09.b1 MSMg01no374_m09.b1 CHROMAT_FILE:
MSMg01no374_m09.b1 PHD_FILE: MSMg01no374_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:07 2005
         (442 letters)



>mm_chr1_85099973_85100815
          Length = 843

 Score =  752 bits (389), Expect = 0.0
 Identities = 431/447 (96%), Gaps = 5/447 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagcaagttccagaatagtcaggactacacaacaaacaaacacaaagaatatcaaagt 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagcaagttccagactagtcaggactacacaacaaacaaacacaaagaatatcaaagt 260

                                                                       
Query: 61  tatctgttaccaaaaaaatcttgagagggtc-ttttttttaaagaacctaaaatttataa 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| 
Sbjct: 261 tatctgttaccaaaaaaatcttgagagggtctttttttttaaagaacctaaaatttatat 320

                                                                       
Query: 120 gtagtaacatataaaaatatacaataatttttattttaaacttaaggaggctggctatgt 179
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gtagtaacatataaaaaaatacaataatttttattttaaacttaaggaggctgtctatgt 380

                                                                       
Query: 180 atat----gtgcttgctcgtgtgtatgtgcctggcatatgcctgggcaaggagtccagtt 235
           ||||     |||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 atatacacatgcttgcttgtgtgtatgtgcctggcatatgcctgggcaaagagtccagtt 440

                                                                       
Query: 236 gctctccaccttatgttttgatatggggtctctcactgaacccggatatcattagttcag 295
           | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctccaccttatgttttgagatggggtctctcactgaacccggatatcattagttcag 500

                                                                       
Query: 296 ctagattagctggccagtcatctccggggatccaactgtctatatttccccaattctgga 355
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 ccagattagctggccagtcatctccggggatccaactgtctatatttccctaattctgga 560

                                                                       
Query: 356 gttaaaaacacacaccactacaccctggtttcatgtggaatctgaaatgaactccccata 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttaaaaacacacaccactacaccctggtttcatgtggaatctgaaatgaactccccata 620

                                      
Query: 416 aaatctgagttggaactaaattatttc 442
           |||||||||||||||||||||||||||
Sbjct: 621 aaatctgagttggaactaaattatttc 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 843
Length adjustment: 9
Effective length of query: 433
Effective length of database: 834
Effective search space:   361122
Effective search space used:   361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)