NCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCCTTACCTAAACATGATAAAAGCAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACAT
AGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAA
CCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACA
AGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGG
CGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGT
CTCTGAAGAAAGAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCGT
GCTCATGGATTGGCANGATACATATTGTAAAAATGGCTATCTTGGCCAAA
GCAATCTAAGAATTCATGCAATCCCCCTCCAAAATTCCAATCCATTTCTT
CCCGAATTAAAAAGAGGAAATTTGGAAATTCCTTCTGGGAAGAAAAAAAA
CCCTCGGAATCTAAAAATCCTG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAAAACGGCGGTGTTTTTTTTC
CCCAAAATGCCAGTGAGAATCTGTCCTCATTTATGAAATTCTATATGAAA
TTAATTACTTCCCTTTTCATAACTAGCGAATTCGTGAGAATGGCGGGGTT
TTCCCTAAATGCCAGTGAGAACCTGTCTTCATTTGTGAAATTCTAAGAGG
AATTTAGAAACAGAAGAACTCTTTAATCCAATTCAACAACTGTGTACTGT
GTGTTGTGCACTGGTTCTATTTCTGGTTTTATGGGTAACATTAAGTAAGA
CAAACCCATTCCTTCTCCTCAAGGAACACACTGGGATACTTGAAACCACA
CATAAAATAATGCAAGCAATCTGTGATAATCTTATGGCCCACTAACAGTC
TGAGTAATGCGGATCTCCTAAGTGCTATGCAAGAGTAAAGAAGATTCTGT
TGACTGTCTGTGGCCCCAGGGAACTGATGCCACCTATCCTTGAGAGCAGA
ATCTAGATTAATGGAAAATAGAACGCCCTGATATTAAGTGAACTATTAAT
TCCATGGAAGATGTATGTAAATTTGGTTGTGTACTGGGGAATTAAGAGTC
ATTAAACATGGTCTTAATTGTTTTTCACTAAAATGTTGCGTTTTTCTCCC
ACTACTCCTTCCTTTTATTTTAACCACGTCCGCTTTTCCTCCTAATACCC
GTTCTGGCCCCCCAATTAAAATAATCCGTTACACACCCTCTCCCC

Query= MSMg01no375_i16.g1 MSMg01no375_i16.g1 CHROMAT_FILE:
MSMg01no375_i16.g1 PHD_FILE: MSMg01no375_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:10 2005
         (435 letters)



>mm_chr1_62096918_62097753
          Length = 836

 Score =  828 bits (428), Expect = 0.0
 Identities = 434/436 (99%), Gaps = 1/436 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaaacggcggtg-ttttttttccccaaaatgccagtgagaatctgtcctcatttatg 59
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 636 atgaaaacggcggtgttttttttttcccaaaatgccagtgagaatctgtcctcatttatg 577

                                                                       
Query: 60  aaattctatatgaaattaattacttcccttttcataactagcgaattcgtgagaatggcg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aaattctatatgaaattaattacttcccttttcataactagcgaattcgtgagaatggcg 517

                                                                       
Query: 120 gggttttccctaaatgccagtgagaacctgtcttcatttgtgaaattctaagaggaattt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gggttttccctaaatgccagtgagaacctgtcttcatttgtgaaattctaagaggaattt 457

                                                                       
Query: 180 agaaacagaagaactctttaatccaattcaacaactgtgtactgtgtgttgtgcactggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaaacagaagaactctttaatccaattcaacaactgtgtactgtgtgttgtgcactggt 397

                                                                       
Query: 240 tctatttctggttttatgggtaacattaagtaagacaaacccattccttctcctcaagga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tctatttctggttttatgggtaacattaagtaagacaaacccattccttctcctcaagga 337

                                                                       
Query: 300 acacactgggatacttgaaaccacacataaaataatgcaagcaatctgtgataatcttat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acacactgggatacttgaaaccacacataaaataatgcaagcaatctgtgataatcttat 277

                                                                       
Query: 360 ggcccactaacagtctgagtaatgcggatctcctaagtgctatgcaagagtaaagaagat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggcccactaacagtctgagtaatgcggatctcctaagtgctatgcaagagtaaagaagat 217

                           
Query: 420 tctgttgactgtctgt 435
           ||||||||||||||||
Sbjct: 216 tctgttgactgtctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 836
Length adjustment: 9
Effective length of query: 426
Effective length of database: 827
Effective search space:   352302
Effective search space used:   352302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)